Utilities for Working with NEON Data

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Documentation for package ‘neonUtilities’ version 3.0.0

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byEventSIM Get site management data by event type.
byFileAOP Serially download all AOP files for a given site, year, and product
byTileAOP Download AOP tiles overlapping specified coordinates for a given site, year, and product
chem_bundles Bundled chemistry data product information
datasetQuery Query the query endpoint of the NEON API and create an arrow dataset from the results
footRaster Extract eddy covariance footprint data from HDF5 format
getAvg Get a list of the available averaging intervals for a data product
getCitation Get a Bibtex citation for NEON data with a DOI, or generate a provisional Bibtex citation
getDatatable Get NEON data table
getHorVer Get the horizontal and vertical location indices for a given data product and site
getIssueLog Get the issue log for a specific data product
getNeonDOI Get either a list of NEON DOIs, or the DOI for a specific data product and release
getPackage Get NEON data package
getProductInfo Get NEON data product information
getProductSensors Get data product-sensor relationships
getTaxonTable Get NEON taxon table
getTimeIndex Get a list of the available time intervals for a data product
getVarsEddy Extract list of eddy covariance tables from HDF5 files
loadByProduct Get files from NEON API, stack tables, and load into the current environment
other_bundles Bundled vegetation and sediment data product information
queryFiles Get a list of data files from the query endpoint of the NEON API
readTableNEON Read a NEON data table with correct data types for each variable
schemaFromVar Create an arrow schema from a NEON variables file.
shared_aquatic Terrestrial-aquatic shared data information
shared_flights Flight coverage information
stackByTable Join data files in a zipped NEON data package by table type
stackEddy Extract eddy covariance data from HDF5 format
stackFromStore Select files from a stored set of NEON data, created by neonstore package methods or another method
table_types Publication table information
tokenDate Get expiration date for a NEON API token
transformFileToGeoCSV Transform NEON CSV file to GeoCSV
zipsByProduct Get files from NEON API to feed the stackByTable() function
zipsByURI Get files from NEON ECS Bucket using URLs in stacked data