| RNentropy-package | Entropy Based Method for the Detection of Significant Variation in Gene Expression Data |
| RNentropy | RNentropy |
| RNentropy_iso_switch | RNentropy_iso_switch |
| RN_BarresLab_design | RN_BarresLab_design |
| RN_BarresLab_FPKM | RN_BarresLab_FPKM |
| RN_Brain_Example_design | RN_Brain_Example_design |
| RN_Brain_Example_tpm | RN_Brain_Example_tpm |
| RN_calc | RN_calc |
| RN_calc_GPV | RN_calc_GPV |
| RN_calc_LPV | RN_calc_LPV |
| RN_IsoSwitch_Example_S7 | RN_IsoSwitch_Example_S7 |
| RN_iso_calc | RN_iso_calc |
| RN_iso_select | Select genes with significant changes in relative isoform usage |
| RN_pmi | Compute point mutual information matrix for the experimental conditions |
| RN_select | Select transcripts/genes with significant p-values |