ConnectivityDiff        Connectivity difference between two conditions
add_Genes               Add gene information
calculate_avg_count     Calculate Average Count within 5-pixel Padding
check_package           Check if a package is installed
getContactFrequency     Get contact Frequency
getContactProbability   Contact probability
getElbowPoint           Estimation of elbow point from J-shaped-curve
get_all_chr_names       Retrieve chromosome names from .hic file
get_example_hic_file    Example download
get_txdb                All available Txdb
hic2community           Create module objects from the Hi-C data
hic2network             HiC to network data format
visualizeModule         Visualization of module
