Package: gbif.range
Version: 1.9.1
Title: Species Range Mapping from GBIF Using Ecoregion Constraints
Depends: R (>= 4.0.0)
Imports: terra, rgbif, CoordinateCleaner, sf, ClusterR, FNN, geometry,
        cluster, mclust, methods, utils, zip, class, NMOF, stats,
        tools, graphics, grDevices
Suggests: data.table, knitr, rmarkdown, testthat (>= 3.0.0)
Description: Provides a workflow to retrieve, filter, and analyze 'GBIF'
 occurrence records and to generate ecologically informed species range maps
 using downloaded or custom ecoregions. The package includes tools for
 querying the 'GBIF' backbone taxonomy with get_status(), counting or
 downloading occurrences with get_gbif_count() and get_gbif(), creating
 custom ecoregion layers with make_ecoreg(), building range maps with
 get_range(), and evaluating them against independent validation data with
 evaluate_range() and cv_range(). A disk-based batch workflow
 (split_gbif_by_species(), species_csvs_to_ranges(), read_range_rds())
 supports large multi-species 'GBIF' exports without loading the full table
 into memory. Bundled ecoregion layers cover terrestrial (Olson et al. 2001
 <doi:10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2>), marine (Spalding
 et al. 2007 <doi:10.1641/B570707>), and freshwater (Abell et al. 2008
 <doi:10.1641/B580507>) realms. The 'GBIF' API is accessed via the
 'rgbif' package, and coordinate cleaning uses 'CoordinateCleaner'
 (Zizka et al. 2019 <doi:10.1111/2041-210X.13152>). The 'GBIF' API is
 described at <https://www.gbif.org/developer/summary>.
License: GPL (>= 3)
URL: https://github.com/8Ginette8/gbif.range,
        https://8ginette8.github.io/gbif.range/
BugReports: https://github.com/8Ginette8/gbif.range/issues
Encoding: UTF-8
Language: en-US
LazyData: true
VignetteBuilder: knitr
Config/testthat/edition: 3
Authors@R: c(
 person("Yohann", "Chauvier", role = c("cre", "aut"),
   email = "yohann.chauvier@wsl.ch",
   comment = c(ORCID = "0000-0001-9399-3192")),
 person("Oskar", "Hagen", role = "aut",
   email = "oskar@hagen.bio",
   comment = c(ORCID = "0000-0002-7931-6571")),
 person("Stefan", "Pinkert", role = "aut",
   comment = c(ORCID = "0000-0002-8348-2337")),
 person("Camille", "Albouy", role = "aut",
   comment = c(ORCID = "0000-0003-1629-2389")),
 person("Fabian", "Fopp", role = "aut",
   comment = c(ORCID = "0000-0003-0648-8484")),
 person("Philipp", "Brun", role = "aut",
   comment = c(ORCID = "0000-0002-2750-9793")),
 person("Patrice", "Descombes", role = "aut",
   comment = c(ORCID = "0000-0002-3760-9907")),
 person("Florian", "Altermatt", role = "aut",
   comment = c(ORCID = "0000-0002-4831-6958")),
 person("Lo\u00efc", "Pellissier", role = "aut",
   comment = c(ORCID = "0000-0002-2289-8259")),
 person("Katalin", "Csillery", role = "aut",
   comment = c(ORCID = "0000-0003-0039-9296")))
Collate: 'make_tiles.R' 'get_gbif.R' 'get_status.R' 'get_doi.R'
        'obs_filter.R' 'get_range.R' 'conv_function.R'
        'get_gbif_count.R' 'make_ecoreg.R' 'get_ecoreg.R'
        'evaluate_range.R' 'data.R' 'make_blocks.R' 'optme.R'
        'cv_range.R' 'classes.R' 'helpers.R' 'gbif_file_workflows.R'
        'gbif.range-package.R' 'merge_range.R'
RoxygenNote: 8.0.0
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-07-31 05:00:34 UTC; chauviyo
Author: Yohann Chauvier [cre, aut] (ORCID:
    <https://orcid.org/0000-0001-9399-3192>),
  Oskar Hagen [aut] (ORCID: <https://orcid.org/0000-0002-7931-6571>),
  Stefan Pinkert [aut] (ORCID: <https://orcid.org/0000-0002-8348-2337>),
  Camille Albouy [aut] (ORCID: <https://orcid.org/0000-0003-1629-2389>),
  Fabian Fopp [aut] (ORCID: <https://orcid.org/0000-0003-0648-8484>),
  Philipp Brun [aut] (ORCID: <https://orcid.org/0000-0002-2750-9793>),
  Patrice Descombes [aut] (ORCID:
    <https://orcid.org/0000-0002-3760-9907>),
  Florian Altermatt [aut] (ORCID:
    <https://orcid.org/0000-0002-4831-6958>),
  Loïc Pellissier [aut] (ORCID: <https://orcid.org/0000-0002-2289-8259>),
  Katalin Csillery [aut] (ORCID: <https://orcid.org/0000-0003-0039-9296>)
Maintainer: Yohann Chauvier <yohann.chauvier@wsl.ch>
Repository: CRAN
Date/Publication: 2026-08-07 20:50:02 UTC
Built: R 4.5.3; ; 2026-08-09 23:51:30 UTC; windows
