Real-Time Effective Reproduction Number Estimation and Forecasting


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Documentation for package ‘RtForecastR’ version 0.1.1

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compute_lambda Total infectiousness (renewal-equation convolution)
coverage Empirical coverage of a prediction interval
interval_score Interval score for a single central prediction interval
jalisco Weekly measles cases, Jalisco (larger-outbreak example)
mae Mean absolute error
measles_cdmx Weekly measles cases, Ciudad de Mexico (worked example)
mse Mean squared error
plot.rtforecast Plot method for rtforecast objects
rmse Root mean squared error
rt_forecast Estimate and forecast the time-varying effective reproduction number
score_batches Score realized-vs-forecast performance across weekly output batches
wis Weighted interval score (WIS)