ad490383063ef9828c70842fec7214a736d51aa4f3423977913ed059f0178faa 1086 CITATION
0663fd8d57e00036d0afbbd51821bf30fe164313a51c1efa56da6ca5292d319c 794464 data/Rdata.rdb
c900a8e0146f6a27bd10faeb94681f728b517fcec074b810250c8148fc153054 274 data/Rdata.rds
bfa0dcebcabe0e9a7b89157dec0d3446d68d1056fd282e53636761a911a923cb 448 data/Rdata.rdx
eae8595fe4290ade2955d1cc8b26dd2e7c41c2a08b2d2c1ede21d392186f50b2 3239 DESCRIPTION
17559bcd270aca28a1bc4513882950a0d1a76db05857e10a8ede6d762d1fa16f 315370 doc/cnsignature.html
2d0f0d6c88588eb4beb648659707fae6d11395425731aa4d45497b4e817a006b 2183 doc/cnsignature.R
48a135b12cbac1183b2254dee9d3909aefc070599faff1deeaaa4e6b7a720739 3166 doc/cnsignature.Rmd
94992b03f23d08b3b54efac84a1ab044ff0aff24d747570a4bf73347d17941de 1842 doc/index.html
0bfbebc34f2e65171786bf109d4ccf93ab4d4febbff8800c334016f88dc24e81 357883 doc/sigminer.html
597544725ec8701e44d37c5f3a2aee39a68afd81660639125900598ac8bb66af 2018 doc/sigminer.R
621df12a92130a95143513efe59803204ed51271c85b6824a317e1f0ca49b58e 2388 doc/sigminer.Rmd
2a25d26deb1341193bda280c76bbceb1e7582b40f270474b2ee617a31778e95a 11928 extdata/asso_data.RData
ebf88acbed6e38f88d75c9c99f106a616981cd5c288f4173051cc020a87e7b34 1392 extdata/CN40-Map.txt
bc86ab7147d6154eac684df48d511111bd98799ca34cf6a91e57388f3f6605fd 1608 extdata/CN48-Map.txt
de59f956ae0f7f7adef92556aa75a235f75b350e941b7e27dd49ae75fe7479a8 18119 extdata/CNS_signatures_PCAWG176.rds
b46b5fa0b8445bd25992ddf3aa0c20bc907ba05853e46a84a1270547c1dfc5ca 7403 extdata/CNS_signatures_TCGA.rds
2e23d4a6b9079844c390689d582cf0498b96cf58f38757147408e885eca42295 25741 extdata/CNS_signatures_TCGA176.rds
621d17bdb212d7ac4d86cd35b75bfee5afa3006caf46868eed14c0c4365729a4 2332 extdata/CNS_signatures_USARC.rds
ab10628f5fb37d5cce908f05f00d9561f9142fcb9502ff7e5094ab05687170c2 826 extdata/cosmic2_record_by_cancer.rds
2ec7b9c4e3487fb308c7e9b358c4112e33b9339f87d8d9a52b92d20c72661309 25963 extdata/DBS_signatures_list.rds
71ea538dbf2525ca00624fc482b7590b4591b13cb55d26034beb00e17266f24d 6725 extdata/DBS_signatures.rds
d2b5b1dc55506b09c4f8c0164df4c5d3f09f84d7788fb365d2c24c2155ca84f2 126569 extdata/e1.RData
409639c3b652a95c9edd6a751d75b798fc1862f9e45cf786df32fcd16e7b0ae8 1131780 extdata/human_hg19_gene_info.rds
b8e4a94caf8b5ed372f7eeef5c8849c7e61ed384ff9ac09cc656d755c42c0a6d 11065 extdata/ID_signatures.rds
c90c8372aa93a9b75e4c99f6e9d5163248f1fc0341e3b503b9a0da98538ba1ba 18846 extdata/metastatic_tumor.segtab.txt
1bf34a9481d8f60649a5686a8d7846913256cac073b889072d575d8a626f4ae1 1501 extdata/RS_signatures_BRCA560.rds
31b00a878cb3c6c7a505de7b353e44be81bf8f65620622e5687a8e76c1497922 21261 extdata/RS_signatures_Nik_lab_Organ.rds
d65f645821d87414eab1854c05100386244be4c420c374cda69633ec065d2306 5291 extdata/RS_signatures_Nik_lab.rds
77d979df545788bd8159b94c8530d5ad8d96d662430f5651c338d67bfd604df7 1723 extdata/RS_signatures_USARC.rds
3c03c8f4444f4cce0ecc787a780a14e7370409a3b051349ec928f759889ef5c2 190814 extdata/SBS_signatures_list.rds
60e7c78a229ca82c0f8a480574aba0412313bbb03f15f722a96ecac6096ed981 142456 extdata/SBS_signatures_Nik_lab_Organ.rds
c228ce4717eb7c6ec660b2de3047d40590e2327d0f8c3eb73e55aaca9ca8dc9a 30841 extdata/SBS_signatures_Nik_lab.rds
4972094c771e43fa96c62fd3cca7d577077da9c3badf50e14dae4755e18fa4fd 50184 extdata/SBS_signatures.rds
b780bdcb2f3b62ce44ba909e6a47620423a4c0063cbeb7a63d960f140e53bbe6 4326 extdata/signature_record_by_cancer.rds
ed981ef461494dbf81b0df36f7e91b0052bc0b5a3211dd04a6e8c738f61d2d65 22711 extdata/test1.vcf
7c094c8e80bdc97629c3f9b22fb8e9f5e7357f8b88e79abd32031d95205eba88 22874 extdata/test2.vcf
0975a6ddaad178489f42e4ea68d14e1360ddb6b2624ae168080c1d2d86d8e899 12177 extdata/test3.vcf
e5f84247fd6a5bdd251b0cf0e1cd61b65ad3bad643f7dee8d32b4546e25316f5 11059 extdata/toy_cn.RData
f5fe595d44f6259082aa91e7eb239d0cf49a1ee36ae2042c78b46069b4a56481 6037 extdata/toy_cnlist.RData
eacfca4b2afc3aafb7a400bd768b44860b2076e14314399feacf884d0ebd6151 5021 extdata/toy_copynumber_signature_by_W.RData
aa41720c3b7b6f67ac12e7d2936d81e597082daa7aa6c3142bfa9c8c5d6a2a0c 7308 extdata/toy_copynumber_tally_W.RData
67cd3298910e3e0f1ddcb3ddb036374efa662747f84577767c4bf516c0a5bce5 8387 extdata/toy_copynumber.RData
5f0af128506b609927dbdc14723b58593e90dbd0f97f642576367aeb60099258 9352 extdata/toy_mutational_signature.RData
4e16b39ce7de85184ac9c4632cd2c062d85cae7157413014ab8ff081bac2699a 4054 extdata/toy_segTab.RData
9293616817575087d27857667271d49b34d5fc7794adb613acd590d6c2df49cf 97710 extdata/toy_sv.rds
6aebcbf9c47f1503a04d4537d97a5aa25d312f93715a2477899823ea348ceaa6 93704 extdata/TSB_signatures.rds
2fc968cdf3080a6d0b031aa5a750f9dfff6e9db060b21f8dcc556181a1c637c5 1359 help/aliases.rds
c21a070395c074b06f2b10ec0628328b7274f2e3c27f72474226174b205712b3 4613 help/AnIndex
26c72144c3e4de6456c079fa273b71bca88bf9d3497a6111e9ecb29cea8cbc77 43137 help/figures/logo.png
9534b778dcc282a5cc5d228abec9cdc94560b7e53e889f32d7b7bf2d45db30ab 65495 help/figures/README-unnamed-chunk-1-1.png
357fab3fc5cee26f3b0e6482ea8211557bd1e97347b3998543760f834413a488 68744 help/figures/README-unnamed-chunk-2-1.png
6fd3245062c31827929871642ea69045d17b136e908b05695eafbf53fed0d600 72486 help/figures/README-unnamed-chunk-3-1.png
57aba4036598dbd76f999cabebe76bfa3ee66aa6a2980e775c3160b2144cf8a0 67257 help/figures/README-unnamed-chunk-4-1.png
68011515a35af6d884f4cb05582ea3f6b149897f536b22e4271c1e213a8e87bf 65162 help/figures/README-unnamed-chunk-5-1.png
09b4997d952e123f807310f05af50e3b57af074fde32014d9075a54b3cf7aff9 61110 help/figures/README-unnamed-chunk-6-1.png
d8df94a2b3f3328b4ec49d4325b1efea4dd66a3dd85f53845767785abda2ed8d 35998 help/figures/README-unnamed-chunk-7-1.png
37b3ef23efe3e49b817b392e5c6e0b3f05b12d8e1b86d52b2dec0aa7a0b8b8ba 30454 help/figures/README-unnamed-chunk-8-1.png
6c0057bf4ac05a0a72d4773f68acf2c78c1d7c23dc748fd5e97e0b83cd0fb62c 1183582 help/figures/README-unnamed-chunk-9-1.png
8622be1eeca449733b1d40cac7328c5d22b3d935b2ee943936dfc692c39a3e5b 1142 help/paths.rds
e5f2842a64f6be91441c9b9ebf6e8b58d1cc1dadb33fe84fdc21b40ba690c956 309902 help/sigminer.rdb
a3a55ec7277fcfed010194e4c4a4c48c3a731f5f7cf90be96340fb5305fc693b 2565 help/sigminer.rdx
7f74bfbcb88f3dbd7e644ac70888a2414fd3a4e96d21250c403f10205ae9c6d6 21600 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
7038ab32e4e8464ccc4948a07cc62860ab56b892ee76cacc8995072c4c060ad4 7806 INDEX
cfcad3de8c19d76c413ea7f713f860ff4f5811e36c310293fe0014a399fc1e06 137016 libs/sigminer.so
a5c5567ec7cf90ea6c11ac0705cbdd555d594c0ea153e3ff23d73969c791dc4e 640 libs/sigminer.so.dSYM/Contents/Info.plist
a1a60ca933b4079162ecd94fb847c7e7d0d22da80efd3d7da9459a5c0db55579 859086 libs/sigminer.so.dSYM/Contents/Resources/DWARF/sigminer.so
ed9c47ee47614e407e1e797dded5958370ae9ba0fe8eadf921500e657b34d8c1 24111 libs/sigminer.so.dSYM/Contents/Resources/Relocations/aarch64/sigminer.so.yml
e751d8293e35d82782f26673089243a61f7d006451576bd68a71056f24bb0188 57 LICENSE
fa67bd3f7fa085cded180ff8d5fb7afb2e3fb6cf918057fe067ef61f6d364165 466 Meta/data.rds
b4f074bc0f45cfe56d976c0d67a1453067f4b34693828ed02d674a6641b3e332 123 Meta/features.rds
555782031a2e94d6201a1c334a845324f57702e16f03baf93aacac39fbe9bbf8 3587 Meta/hsearch.rds
0eff1f722ad874ebb2820d16c37c7a7f339d8c2114226b9b5433dc548184b01f 1917 Meta/links.rds
26f0bc6755fa070bf4e0dd16b54ebd08c249cf1bee11c7ca7a5aff0a9e855854 1596 Meta/nsInfo.rds
29c66cdd7f033e95f24a4089ccf026d3bbf9b291ec17e8e6362984a501249a20 2428 Meta/package.rds
d303eeba128410b71ff6c2175549ca57c7153fc3c6b67168369f04c354436e6e 4050 Meta/Rd.rds
6c445e7e4e14bba704b7efc52c17615e9f2cf35b6504bbe0d8c02c7ea333a6d6 267 Meta/vignette.rds
37744aee7eb63c89501109f50da4b5a7155d4912bc5540cda8764062866a90df 4046 NAMESPACE
70a26dacc4af0d56221e9975eea2e864adc1ce4154b87afebbf1ccb1dc709d2b 19236 NEWS.md
80c1cb3ebd79b94a6b67434cbe9708a3743909d666ee647c71cb5c464c4e0e59 2589 py/nmf.py
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/sigminer
347be2c90234238cd0c1a619664c0d75ba7d0887d4fed71ebd2f4c3fec43324a 862211 R/sigminer.rdb
412dbadd317124f58926ceb04cc3e489896442738bba41c79f30dfae020aa5b7 4496 R/sigminer.rdx
9d6f7145332b564704ba00d575fc3f86740d31e19a4d31fc30f74f9556648c44 9239 README.md
