# Datasets from the UK COVID-19 Outbreak

## Documentation for package ‘ukc19’ version 0.0.3

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

covid_challenge | COVID-19 viral load following challenge
covid_variants | COG-UK counts of genomic variants
covid_variants_ltla | COG-UK counts of genomic variants by lower tier local authority
du_serial_interval | Serial interval from publicly reported cases
early_global_combined | John Hopkins data from the early outbreak
england_cases_by_5yr_age | England only COVID-19 case counts stratified by 5-year age bands
england_covid_positivity | England only COVID-19 case counts with total test numbers
ganyani_clusters | COVID-19 cluster outbreaks data from Tianjin and Singapore
geography | UK geographic codes an CTRY, RGN and LAD level
ltla_cases | UK-wide COVID-19 case counts stratified by Lower tier local authority
nhs_app | NHS digital contact tracing activity
ons_infection_survey | ONS COVID-19 infection survey
pcr_test_sensitivity | COVID PCR test sensitivity over time
spim_consensus | SPI-M-O consensus reproduction number and growth rate estimates
timeline | Timeline of events
uk_population_2019 | Country, regional, and sub-national total population estimates
uk_population_2019_by_10yr_age | Country, regional, and sub-national population estimates by 10 year age groups
uk_population_2019_by_5yr_age | Country, regional, and sub-national population estimates by 5 year age groups
viral_shedding | COVID-19 Viral shedding data