AFSD                    Analysis of foci structure and dynamics (AFSD)
BPL                     Binary Power Law Analysis for Spatial Disease
                        Patterns
BlastWheat              BlastWheat dataset
BudBlightSoybean        BudBlightSoybean dataset
CompMuCens              Survival analysis for quantitative ordinal
                        scale data
DSI                     Calculate the Disease Severity Index (DSI)
                        (class for each unit)
DSI2                    Calculate the Disease severity Index (DSI)
                        (frequency of each class)
DidymellaWatermelon     DidymellaWatermelon dataset
FHBWheat                FHBWheat dataset
FHBWheatBrazil          FHBWheatBrazil dataset
FusariumBanana          FusariumBanana dataset
RustSoybean             RustSoybean dataset
SpatialAggregated       SpatialAggregated dataset
SpatialRandom           SpatialRandom dataset
WhiteMoldSoybean        WhiteMoldSoybean dataset
augment                 Augment generic for functional objects
augment.functional_rate
                        Augment functional_rate
augment_functional_pca
                        Augment functional PCA
augment_functional_rate
                        Augment functional_rate (alias)
count_subareas          Count the Number of Ones in Subareas of a
                        Matrix
count_subareas_random   Random Subgrid Sampling of a Binary Matrix
diagnose_curves         Diagnostic tools for functional epidemic curve
                        models
fit_gradients           Fit Gradient Models to Data
functional_contrast     Functional Contrast (Disease Suppression
                        Profiles)
functional_curves       Fit genotype-specific epidemic trajectories
                        using GAM
functional_distances    Compute pairwise functional distances and
                        cluster curves
functional_instability
                        Normalized functional instability from fitted
                        functional disease curves
functional_pca          Functional principal component analysis of
                        disease progress curves
functional_pca_clusters
                        Cluster curves based on FPCA scores
functional_rate         Instantaneous Disease Progress Rates from
                        Functional Curves
functional_resistance   Compute functional resistance and
                        stability-adjusted functional resistance
functional_summary      Summarize Disease Suppression Profiles
functional_suppression_profiles
                        Functional suppression profiles of disease
                        control treatments
get_brdwgd              Fetch BR-DWGD Data for Multiple Locations
get_era5                Fetch ERA5 Data from Open-Meteo for Multiple
                        Locations
get_fpca_eigenfunctions
                        Get FPCA eigenfunctions
get_fpca_scores         Get FPCA scores
get_fpca_variance       Get FPCA variance explained
get_nasapower           Fetch NASA POWER Data for Multiple Locations
                        with a Progress Bar
join_count              Test for Spatial Join Count Statistics
oruns_test              Runs Test
oruns_test_boustrophedon
                        Boustrophedon Run Test for Binary Matrix
oruns_test_byrowcol     Runs Test for Each Row and Column of a Binary
                        Matrix
plot.functional_curves
                        Plot functional_curves
plot.functional_rate    Plot functional_rate curves and rates
plot.functional_suppression_profiles
                        Plot functional suppression profiles
plot.functional_suppression_profiles_list
                        Plot a list of functional suppression profiles
plot.r4pde_functional_pca
                        Plot functional PCA results
plot_AFSD               Plot ASFD
plot_curves             Plot environment-adjusted epidemic curves by
                        cluster
plot_dendrogram         Plot functional dendrogram of epidemic curves
plot_diagnostics        Plot diagnostics for functional epidemic curve
                        models
plot_dsp                Plot Disease Suppression Profiles
plot_dsp_rank_heatmap   Plot DSP Rankings Heatmap
plot_functional_instability
                        Plot method for functional instability results
print.functional_curves
                        Print functional_curves
print.functional_distances
                        Print functional_distances
print.functional_rate   Print a functional_rate object
print.functional_resistance
                        Print functional_resistance
print.functional_suppression_profiles
                        Print functional suppression profiles
print.functional_suppression_profiles_list
                        Print a list of functional suppression profiles
print.r4pde_curve_diagnostics
                        Print method for curve diagnostics
print.suggest_k         Print method for suggest_k
print.summary.functional_suppression_profiles
                        Print summary of functional suppression
                        profiles
print.summary.functional_suppression_profiles_list
                        Print summary of a list of functional
                        suppression profiles
rank_dsp                Rank Treatments based on Functional DSP
                        Descriptors
reconstruct_curves      Reconstruct curves using specified FPCA
                        components
simulate_dsp_data       #' Simulate Disease Suppression Profile Data
suggest_k               Suggest GAM smoothing parameters for epidemic
                        curve models
summary.functional_rate
                        Summarize a functional_rate object
summary.functional_suppression_profiles
                        Summarize functional suppression profiles
summary.functional_suppression_profiles_list
                        Summarize a list of functional suppression
                        profiles
theme_r4pde             Custom ggplot2 theme based on
                        cowplot::theme_half_open
windowpane              Window Pane for Epidemiological Analysis
windowpane_tests        Windowpane Tests for Correlation Analysis
