Ready-to-Analyze Datasets from Camera Trap Data

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Documentation for package ‘soReta’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as_capture_strings	Convert an individual x occasion table (or a list per species) into CMR capture-history strings
build_cmr_block	Build an N-day-block individual x block capture history (classic CMR)
build_cmr_day	Build a daily individual x day capture history (classic CMR)
build_day_total	Build a dataset with 1 row per calendar day, aggregating across all stations
build_diel_binomial_block	Build a binomial site x N-day-block x time-bin x species dataset
build_diel_binomial_month	Build a binomial site x month x time-bin x species dataset
build_diel_binomial_period	Build a binomial site x period/season x time-bin x species dataset
build_diel_day	Build a non-aggregated, day-by-day site x day x time-bin x species dataset
build_group_day_total	Build a dataset with 1 row per calendar day, with group size statistics across all stations
build_group_size_block	Build a site x N-day-block dataset with group size statistics per species
build_group_size_day	Build a site x day dataset with group size statistics per species
build_group_size_events	Build a dataset with 1 row per independent event, including group size
build_group_size_month	Build a site x month dataset with group size statistics per species
build_group_size_period	Build a site x period/season dataset with group size statistics per species
build_group_size_total	Build a dataset with 1 row per site, with group size statistics over the entire activity period
build_occupancy_block	Build, for each species, a site x N-day-block detection history
build_occupancy_day	Build, for each species, a daily site x day detection history
build_site_block	Build a site x N-day-block dataset with independent-event counts per species
build_site_day	Build a site x day dataset with independent-event counts per species
build_site_month	Build a site x month dataset with independent-event counts per species
build_site_period	Build a site x period/season dataset with independent-event counts per species
build_site_total	Build a dataset with 1 row per site, aggregating over the entire activity period
build_species_pair_interruptions	Compute the AA/ABA and BB/BAB intervals between two species (Parsons et al. 2016, T3/T4)
build_species_pair_intervals	Compute the AB/BA intervals between two species (Niedballa et al. 2019 method), with censoring
camOp_soReta	Example camera effort matrix for soReta
camtraps_soReta	Example station table for soReta
extract_radians	Extract, per species (and optionally per one or more groupings), a vector of times in radians
radians_to_env	Create a separate object in the environment for each vector in a nested list of radians
recordTableIndividuals_soReta	Example individually-identifiable recordTable for soReta
recordTable_soReta	Example recordTable for soReta