.GS_ALLELE_MAX	GS_ALLELE_MAX
.GS_STVCF_MAX_ALT	GS_STVCF_MAX_ALT
append.population	append.population
be.quiet	be.quiet
concat.population	concat.population
copy.population	copy.population
cross	cross
data.params	data.params
define.effects	define.effects
define.effects.df	define.effects.df
define.genome	define.genome
define.map	define.map
deprecated	deprecated
dh	dh
divide.population	divide.population
DT_technow	DT_technow
effect.weight.set.all	effect.weight.set.all
effmap.remove	effmap.remove
effmap.remove.all	effmap.remove.all
evaluate.all.loci	evaluate.all.loci
evaluate.allele	evaluate.allele
evaluate.allele.freq	evaluate.allele.freq
evaluate.allele.freq2	evaluate.allele.freq2
evaluate.allele2	evaluate.allele2
evaluate.genome	evaluate.genome
evaluate.genotype	evaluate.genotype
evaluate.genotype2	evaluate.genotype2
evaluate.hap.calc	evaluate.hap.calc
evaluate.hap.calc.d	evaluate.hap.calc.d
evaluate.hap.free	evaluate.hap.free
evaluate.hap.init	evaluate.hap.init
evaluate.hap.return.genotype	evaluate.hap.return.genotype
evaluate.hap.return.table	evaluate.hap.return.table
evaluate.haplotype	evaluate.haplotype
evaluate.ld	evaluate.ld
evaluate.locus	evaluate.locus
evaluate.mdp	evaluate.mdp
evaluate.population	evaluate.population
gd.allele.frequencies	gd.allele.frequencies
gd.allow.zero.frequencies	gd.allow.zero.frequencies
gd.correct.missing	gd.correct.missing
gd.data.parameters	gd.data.parameters
gd.distance.similarity	gd.distance.similarity
gd.dummy.populations	gd.dummy.populations
gd.genetic.distance	gd.genetic.distance
gd.list.irregular	gd.list.irregular
gd.list.missing	gd.list.missing
gd.maize.aflp	gd.maize.aflp
gd.maize.lines	gd.maize.lines
gd.maize.populations	gd.maize.populations
gd.mk.matr	gd.mk.matr
gd.pcoa	gd.pcoa
gd.salad.aflp	gd.salad.aflp
gd.similarity.coefficient	gd.similarity.coefficient
gd.splitdot	gd.splitdot
gd.status.zero.frequencies	gd.status.zero.frequencies
generate.effect.file	generate.effect.file
generate.map.file	generate.map.file
generate.population	generate.population
genome.contribution	genome.contribution
genome.parameter.get	genome.parameter.get
genome.parameter.set	genome.parameter.set
genome.segments	genome.segments
genotype.population	genotype.population
get.genome.par	get.genome.par
get.map	get.map
get.mdp	get.mdp
get.population	get.population
get.population.gvalue	get.population.gvalue
get.population.info	get.population.info
get.population.pvalue	get.population.pvalue
get.population.size	get.population.size
get.score	get.score
gs.build.esvs	gs.build.esvs
gs.build.tsps	gs.build.tsps
gs.build.V	gs.build.V
gs.build.Z	gs.build.z
gs.check.pvals	gs.check.pvals
gs.compare.effects	gs.compare.effects
gs.cross.eval.es	gs.cross.eval.es
gs.cross.eval.gd	gs.cross.eval.gd
gs.cross.eval.gd.fct	gs.cross.eval.gd.fct
gs.cross.eval.ma	gs.cross.eval.ma
gs.cross.eval.mi	gs.cross.eval.mi
gs.cross.eval.mu	gs.cross.eval.mu
gs.cross.eval.va	gs.cross.eval.va
gs.cross.info	gs.cross.info
gs.cross.info.gd	gs.cross.info.gd
gs.cross.validation	gs.cross.validation
gs.esteff.lsq	gs.esteff.lsq
gs.esteff.rmla	gs.esteff.rmla
gs.esteff.rmlc	gs.esteff.rmlc
gs.esteff.rmlr	gs.esteff.rmlr
gs.esteff.rmlv	gs.esteff.rmlv
gs.esteff.rr	gs.esteff.rr
gs.estimate.gv	gs.estimate.gv
gs.get.im	gs.get.im
gs.get.info.level	gs.get.info.level
gs.get.V	gs.get.V
gs.get.y	gs.get.y
gs.get.Z	gs.get.Z
gs.info	gs.info
gs.lambda.aov	gs.lambda.aov
gs.lambda.const	gs.lambda.const
gs.lambda.emstep	gs.lambda.emstep
gs.lambda.hsq	gs.lambda.hsq
gs.lambda.reg	gs.lambda.reg
gs.lambda.rmla	gs.lambda.rmla
gs.lambda.rmla.02	gs.lambda.rmla.02
gs.lambda.rmlc	gs.lambda.rmlc
gs.lambda.rmlr	gs.lambda.rmlr
gs.lambda.rmlv	gs.lambda.rmlv
gs.lambda.rrblup	gs.lambda.rrblup
gs.mme.coeff	gs.mme.coeff
gs.mme.invcoeff	gs.mme.invcoeff
gs.mme.restcoeff	gs.mme.restcoeff
gs.mme.restrhs	gs.mme.restrhs
gs.mme.rhs	gs.mme.rhs
gs.mme.solve	gs.mme.solve
gs.mmet.coeff	gs.mmet.coeff
gs.mmet.coeff.3	gs.mmet.coeff.3
gs.mmet.rhs	gs.mmet.rhs
gs.mmet.solve	gs.mmet.solve
gs.neg.effall	gs.neg.effall
gs.plot.effects	gs.plot.effects
gs.plot.model.fit	gs.plot.model.fit
gs.plot.validation	gs.plot.validation
gs.pos.effall	gs.pos.effall
gs.predict.genotypes	gs.predict.genotypes
gs.reset	gs.reset
gs.restrict.marker.data.01	gs.restrict.marker.data.01
gs.return.effects	gs.return.effects
gs.return.pvals	gs.return.pvals
gs.set.all.info.levels	gs.set.all.info.levels
gs.set.allele.codes	gs.set.allele.codes
gs.set.effects	gs.set.effects
gs.set.info.level	gs.set.info.level
gs.set.lambda	gs.set.lambda
gs.set.num.threads	gs.set.num.threads
gs.set.performance.data	gs.set.performance.data
gs.single.marker.aov	gs.single.marker.aov
gs.single.marker.reg	gs.single.marker.reg
gs.start.timer	gs.start.timer
gs.stop.timer	gs.stop.timer
gs.test.mp	gs.test.mp
gs.testeff.lsq	gs.testeff.lsq
gs.testeff.rmlc	gs.testeff.rmlc
gs.testeff.rmlv	gs.testeff.rmlv
gs.vc.rrblup	gs.vc.rrblup
gs.w.aov	gs.w.aov
gs.write.pseff	gs.write.pseff
homozygote	homozygote
il.eval.library	il.eval.library
il.eval.lines	il.eval.lines
il.ideal.library	il.ideal.library
il.overlapping.library	il.overlapping.library
info	info
info.cat	info.cat
init.population	init.population
lib00.map1	lib00.map1
lib00.map1a	lib00.map1a
lib00.map2	lib00.map2
linkage.drag	linkage.drag
linkage.map.get	linkage.map.get
linkage.map.load	linkage.map.load
linkage.map.save	linkage.map.save
list.effects	list.effects
list.populations	list.populations
load.effmap	load.effmap
load.internal.effmap	load.internal.effmap
load.linkage.map	load.linkage.map
mab.compare	mab.compare
mab.df	mab.df
mab.Examples	mab.Examples
mab.Input.files	mab.Input.files
mab.load.data	mab.load.data
mab.save.inds	mab.save.inds
mab.simulate	mab.simulate
mab.tabulate	mab.tabulate
maize.aflp	gd.maize.aflp
Md_technow	Md_technow
Mf_technow	Mf_technow
optimize.population	optimize.population
ph.linkage.map.create	ph.linkage.map.create
phenotype.population	phenotype.population
plabsim	plabsim
plabsim.init	plabsim.init
plabsim.R.date	plabsim.R.date
plabsim.R.version	plabsim.R.version
plabsim.version	plabsim.version
plant	plant
population.append	population.append
population.concat	population.concat
population.copy	population.copy
population.divide	population.divide
population.exist	population.exist
population.individual.remove	population.individual.remove
population.info.get	population.info.get
population.info.set	population.info.set
population.list	population.list
population.matrix.load	population.matrix.load
population.matrix.save	population.matrix.save
population.name.swap	population.name.swap
population.optimize	population.optimize
population.plabsim.load	population.plabsim.load
population.plabsim.save	population.plabsim.save
population.remove	population.remove
population.remove.all	population.remove.all
population.rename	population.rename
population.resize	population.resize
population.sample	population.sample
population.size.get	population.size.get
population.sort	population.sort
population.swap.name	population.swap.name
population.transfer	population.transfer
remove.all.populations	remove.all.populations
remove.effmaps	remove.effmaps
remove.evaluate.population	remove.evaluate.population
remove.genotype.population	remove.genotype.population
remove.map	remove.map
remove.population	remove.population
rename.population	rename.population
reset.all	reset.all
reset.mdp	reset.mdp
resize.population	resize.population
resources	resources
return.population	return.population
rng.choose	rng.choose
rng.info	rng.info
rng.init	rng.init
rng.list	rng.list
sample.population	sample.population
save.linkage.map	save.linkage.map
sdev	sdev
sel.target.define	sel.target.define
select.all.best	select.all.best
select.all.best.intern	select.all.best.intern
select.genotypes	select.genotypes
select.n.best	select.n.best
select.n.best.segments	select.n.best.segments
set.co.freq	set.co.freq
set.eff.weight	set.eff.weigth
set.genome.par	set.genome.par
set.info.level	set.info.level
set.mdp	set.mdp
set.NoLociInit	set.NoLociInit
set.population.gvalue	set.population.gvalue
set.population.info	set.population.info
single.cross	single.cross
sm.start.timer	sm.start.timer
sm.stop.timer	sm.stop.timer
splitdt	splitdt
ssd.mating	ssd.mating
st.calc.ld	st.calc.ld
st.calc.ld.2	st.calc.ld.2
st.calc.q	st.calc.q
st.calc.rf	st.calc.rf
st.chrom.stats	st.chrom.stats
st.copy.marker.data	st.copy.marker.data
st.datadir	st.datadir
st.dataframe.to.STvcf	st.dataframe.to.STvcf
st.dd	st.dd
st.def.hblocks	st.def.hblocks
st.genetic.distances	st.genetic.distances
st.genetic.distances.02	st.genetic.distances.02
st.genetic.distances.fct	st.genetic.distances.fct
st.get.info.level	st.get.info.level
st.get.map	st.get.map
st.get.num.threads	st.get.num.threads
st.get.simpop	st.get.simpop
st.get.simpop.perfdata	st.get.simpop.perfdata
st.get.simpop2	st.get.simpop2
st.id	st.id
st.indir	st.indir
st.info	st.info
st.LDheatmap	st.LDheatmap
st.LDplot.ld	st.LDplot.ld
st.LDplot.map	st.LDplot.map
st.load.performance.data	st.load.performance.data
st.load.vcf.data	st.load.vcf.data
st.mark.alleles	st.mark.alleles
st.marker.data.statistics	st.marker.data.statistics
st.markerdata.to.STvcf	st.markerdata.to.STvcf
st.mxd	st.mxd
st.od	st.od
st.outdir	st.outdir
st.plot.corr	st.plot.corr
st.plot.corr.l	st.plot.corr.l
st.plot.gene.diversity	st.plot.gene.diversity
st.plot.ggt	st.plot.ggt
st.plot.ggt.src	st.plot.ggt.src
st.read.map	st.read.map
st.read.marker.data	st.read.marker.data
st.read.marker.data.df	st.read.marker.data.df
st.read.performance.data	st.read.performance.data
st.recode.hbc	st.recode.hbc
st.recode.hil	st.recode.hil
st.recode.ref	st.recode.ref
st.recode.ref.2	st.recode.ref.2
st.reset	st.reset
st.restrict.marker.data	st.restrict.marker
st.return.performance.data	st.return.performance.data
st.select.phen	st.select.phen
st.set.hblocks	st.set.hblocks
st.set.info.level	st.set.info.level
st.set.matrix.ops	st.set.matrix.ops
st.set.num.threads	st.set.num.threads
st.set.openblas.threads	st.set.openblas.threads
st.set.sim.ef	st.set.sim.ef
st.set.sim.gp	st.set.sim.gp
st.set.sim.mp	st.set.sim.mp
st.set.sim.pp	st.set.sim.pp
st.set.simpop	st.set.simpop
st.simple.ggt.plot	st.simple.ggt.plot
st.start.timer	st.start.timer
st.stop.timer	st.stop.timer
st.STvcf.to.dataframe	st.STvcf.to.dataframe
st.write.map	st.write.map
st.write.marker.data	st.write.marker.data
st_mixed	st_mixed
summarize.gvalue	summarize.gvalue
swap.population.name	swap.population.name
talk.to.me	talk.to.me
v-tropmaize-map	v-tropmaize-map
v-tropmaize-phe	v-tropmaize-phe
v-tropmaize-pop	v-tropmaize-pop
v-tropmaize-vcf	v-tropmaize-vcf
v.tropmaize.map	v-tropmaize-map
v.tropmaize.phe	v-tropmaize-phe
v.tropmaize.pop	v-tropmaize-pop
v.tropmaize.vcf	v-tropmaize-vcf
write.version.2	write.version.2
