Genetic Study of Plant Mixtures

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Documentation for package ‘plantmix’ version 1.0.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

CC	Change in contribution
estimGRM	Estimate a GRM
estimRYMRep	RYM with "rep" effect
estimRYRep	RY with "rep" effect
fitDBVSBVinter	Fit DBV-SBV models for interspecific mixtures
fitGMASMA	Fit GMA-SMA models
getDesignBinaryCropMix	Optimize design for binary crop mixtures
getDesignBinaryVarMix	Optimize design for binary varietal mixtures
getMixtureList	Reformat composition of mixtures into a list
getMixturesPerGeno	Get mixture(s) per genotype
imageMat	Image of a matrix
infoCriterion	Information criterion
invvec	Inverse vec operator
invvecMixes	Inverse vec for mixtures
LER	Land equivalent ratio (LER)
mixSowingWeight	Sowing
mkAllZSMA	Design matrices of SMAs for GMA-SMA models
mkZGMA	Design matrix of GMAs for GMA-SMA models
mkZinterspe	Design matrices for DBV-SBV models in an inter-specific trial
mkZSMA	Design matrix of SMAs for GMA-SMA models
nbSeedsToSownInPure	Sowing
normBiasError	Normalized bias error
paramBoot4TMB	Parametric bootstrap with TMB
pivotMixData2Long	Pivot mixture data into the long format
pivotMixData2Wide	Pivot mixture data into the wide format
plotDesignCropMix	Plot design for crop mixtures
plotDesignVarMix	Plot design for varietal mixtures
plotDiallel	Plot diallel
RII	Relative interaction index (RII)
RIInet	Net Relative interaction index (RIInet)
rmatnorm	Matrix-variate Normal distribution
RY	Relative yield (RY)
RYM	Relative yield of mixture (RYM)
RYP	Relative yield per plant (RYP)
RYT	Relative yield total (RYT)
simulDBVSBVinter	Simulate w.r.t. a DBV-SBV model for interspecific mixtures
simulGenosDoseStruct	Simulate SNP genotypes
summarizeGMASMAs	Model summary
vec	Vec operator