Diagnostic Test Accuracy Meta-Analysis using Template Model Builder

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Documentation for package ‘dtametaTMB’ version 0.1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

dtametaTMB-package	dtametaTMB: Diagnostic Test Accuracy Meta-Analysis using Template Model Builder
anaemia	Anaemia (synthetic data set)
anova.dtametaTMB	Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.Reitsma	Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.RutterGatsonis	Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anticcp	Anticcp dataset
as_revman	Export Model Results for RevMan
as_revman.dtametaTMB	Export Model Results for RevMan
as_revman.Reitsma	Export Model Results for RevMan
as_revman.ReitsmaLCA	Export Model Results for RevMan
as_revman.ReitsmaSubgroup	Export Model Results for RevMan
as_revman.ReitsmaSubgroupLCA	Export Model Results for RevMan
as_revman.RutterGatsonis	Export Model Results for RevMan
as_revman.RutterGatsonisLCA	Export Model Results for RevMan
as_revman.RutterGatsonisSubgroup	Export Model Results for RevMan
as_revman.RutterGatsonisSubgroupLCA	Export Model Results for RevMan
coef.dtametaTMB	Extract model coefficients
coef.DTAmodel	Extract model coefficients
coef.Reitsma	Extract model coefficients
coef.ReitsmaLCA	Extract model coefficients
coef.ReitsmaSubgroup	Extract model coefficients
coef.ReitsmaSubgroupLCA	Extract model coefficients
dementia	dementia dataset
diabetes	Diabetes dataset
dtametaTMB	dtametaTMB: Diagnostic Test Accuracy Meta-Analysis using Template Model Builder
FENO	FENO dataset
fitHoyer	Fit Threshold-Based Bivariate Time-to-Event Model (Hoyer)
fitHoyerAFT	Fit Threshold-Based Bivariate Time-to-Event Model (Hoyer AFT)
fitReitsma	Fit Reitsma Model
fitReitsmaLCA	Fit Reitsma LCA Model
fitReitsmaSubgroup	Fit Reitsma Subgroup Model
fitReitsmaSubgroupLCA	Fit Reitsma Subgroup LCA Model
fitRutterGatsonis	Fit the Rutter and Gatsonis (HSROC) model
fitRutterGatsonisLCA	Fit Rutter and Gatsonis LCA Model
fitRutterGatsonisReg	Fit the Rutter and Gatsonis Regression Model
fitRutterGatsonisSubgroup	Fit the Rutter and Gatsonis Subgroup Model
fitRutterGatsonisSubgroupLCA	Fit the Rutter and Gatsonis Subgroup LCA Model
forest	Forest plot generic
forest.HoyerAFT	Coupled Forest plot for diagnostic test accuracy meta-analysis
forest.Reitsma	Coupled Forest plot for diagnostic test accuracy meta-analysis
forest.ReitsmaLCA	Coupled Forest plot for latent class diagnostic test accuracy meta-analysis
forest.ReitsmaSubgroup	Coupled Forest plot for diagnostic test accuracy meta-analysis
forest.ReitsmaSubgroupLCA	Coupled Forest plot for latent class diagnostic test accuracy meta-analysis
forest.RutterGatsonis	Coupled Forest plot for diagnostic test accuracy meta-analysis
forest.RutterGatsonisLCA	Coupled Forest plot for latent class diagnostic test accuracy meta-analysis
forest.RutterGatsonisSubgroup	Coupled Forest plot for diagnostic test accuracy meta-analysis
forest.RutterGatsonisSubgroupLCA	Coupled Forest plot for latent class diagnostic test accuracy meta-analysis
initHoyerAFT	Compute Initial Parameter Values for Hoyer AFT Models
logLik.dtametaTMB	Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.DTAmodel	Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.HoyerAFT	Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.Reitsma	Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.ReitsmaLCA	Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.ReitsmaSubgroup	Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.ReitsmaSubgroupLCA	Extract Log-Likelihood from Diagnostic Test Accuracy Models
pap	pap dataset
plot.HoyerAFT	Plot Results from a Hoyer Model
plot.Reitsma	Plot Results from a Reitsma Model
plot.ReitsmaLCA	Plot Results from a Reitsma LCA Model
plot.ReitsmaSubgroup	Plot Results from a Reitsma Subgroup Model
plot.ReitsmaSubgroupLCA	Plot Results from a Reitsma Subgroup LCA Model
plot.RutterGatsonis	Plot Results from a Rutter and Gatsonis Model
plot.RutterGatsonisLCA	Plot Results from a Rutter and Gatsonis LCA Model
plot.RutterGatsonisSubgroup	Plot Results from a Rutter and Gatsonis Subgroup Model
plot.RutterGatsonisSubgroupLCA	Plot Results from a Rutter and Gatsonis Subgroup LCA Model
print.HoyerAFT	Print Hoyer AFT Model Object
print.Reitsma	Print Method for Reitsma Objects
print.ReitsmaLCA	Print Method for ReitsmaLCA Objects
print.ReitsmaSubgroup	Print Method for ReitsmaSubgroup Objects
print.ReitsmaSubgroupLCA	Print Method for ReitsmaSubgroupLCA Objects
print.RutterGatsonis	Print Method for RutterGatsonis Objects
print.RutterGatsonisLCA	Print Method for RutterGatsonisLCA Objects
print.RutterGatsonisReg	Print Method for RutterGatsonisReg Objects
print.RutterGatsonisSubgroup	Print Method for RutterGatsonisSubgroup Objects
print.RutterGatsonisSubgroupLCA	Print Method for RutterGatsonisSubgroupLCA Objects
print.summary.DTAmodel	Print a diagnostic test accuracy model summary
restructure_data	Construct Interval Data for Threshold-Based Bivariate Time-to-Event Models
RF	RF dataset
schuetz	Schuetz dataset
summary.HoyerAFT	Summary Method for HoyerAFT Objects
summary.Reitsma	Summary Method for Reitsma Objects
summary.ReitsmaLCA	Summary Method for ReitsmaLCA Objects
summary.ReitsmaSubgroup	Summary Method for ReitsmaSubgroup Objects
summary.ReitsmaSubgroupLCA	Summary Method for ReitsmaSubgroupLCA Objects
summary.RutterGatsonis	Summary Method for RutterGatsonis Objects
summary.RutterGatsonisLCA	Summary Method for RutterGatsonisLCA Objects
summary.RutterGatsonisReg	Summary Method for RutterGatsonisReg Objects
summary.RutterGatsonisSubgroup	Summary Method for RutterGatsonisSubgroup Objects
summary.RutterGatsonisSubgroupLCA	Summary Method for RutterGatsonisSubgroupLCA Objects
tub	tub dataset
vcov.dtametaTMB	Variance-covariance matrix
vcov.DTAmodel	Variance-covariance matrix
vcov.Reitsma	Variance-covariance matrix
vcov.ReitsmaLCA	Variance-covariance matrix
vcov.ReitsmaSubgroup	Variance-covariance matrix
vcov.ReitsmaSubgroupLCA	Variance-covariance matrix