Bayesian Screening and Variable Selection


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Documentation for package ‘bravo’ version 4.1.0

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bits Bayesian Iterated Screening (ultra-high, high or low dimensional).
calc.runtime Estimate SVEN Runtime
dense2sparse Convert numeric genotype matrix to sparse matrix
dense_to_sparse_converter Launch the Sparse Converter Shiny App
mip.sven Compute marginal inclusion probabilities from a fitted "sven" object.
parameter_selection Select Optimal Tuning Parameters
predict.sven Make predictions from a fitted "sven" object.
sven Selection of variables with embedded screening using Bayesian methods (SVEN) in Gaussian linear models (ultra-high, high or low dimensional).
svenetics Launch the SVENETICS Shiny App
svenetics_pipeline Full Multi-Trait GWAS Pipeline