Use 'nlmixr2' to Interact with Open Source and Commercial
Software
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘babelmixr2’ version 0.1.12
Help Pages
| .nlmerNlmerFun | Surrogate gradient function for lme4::nlmer |
| .setupPopEDdatabase | Setup the poped database |
| as.nlmixr | Convert an object to a nlmixr2 fit object |
| as.nlmixr2 | Convert an object to a nlmixr2 fit object |
| babel.poped.database | Expand a babelmixr2 PopED database |
| babelBpopIdx | Get the bpop_idx by variable name for a poped database created by 'babelmixr2' |
| bblDatToMonolix | Convert nlmixr2-compatible data to other formats (if possible) |
| bblDatToMrgsolve | Convert nlmixr2-compatible data to other formats (if possible) |
| bblDatToNonmem | Convert nlmixr2-compatible data to other formats (if possible) |
| bblDatToPknca | Convert nlmixr2-compatible data to other formats (if possible) |
| bblDatToRxode | Convert nlmixr2-compatible data to other formats (if possible) |
| fmeMcmcControl | Control for fmeMcmc estimation method in nlmixr2 |
| getStandardColNames | Determine standardized rxode2 column names from data |
| modelUnitConversion | Unit conversion for pharmacokinetic models |
| monolixControl | Monolix Controller for nlmixr2 |
| nlmerControl | Control for nlmer estimation method in nlmixr2 |
| nlmixr2Est.nlmer | nlmixr2 estimation using lme4::nlmer |
| nlmixr2Est.pknca | Estimate starting parameters using PKNCA |
| nlmixr2NlmerControl | Control for nlmer estimation method in nlmixr2 |
| nonmemControl | NONMEM estimation control |
| pkncaControl | PKNCA estimation control |
| popedControl | Control for a PopED design task |
| popedGetMultipleEndpointModelingTimes | Get Multiple Endpoint Modeling Times |
| popedMultipleEndpointIndexDataFrame | Get Multiple Endpoint Modeling Times |
| popedMultipleEndpointResetTimeIndex | Reset the Global Time Indexer for Multiple Endpoint Modeling |
| pseudoOptimControl | Control for fmeMcmc estimation method in nlmixr2 |
| rxToMonolix | Convert RxODE syntax to monolix syntax |
| rxToNonmem | Convert RxODE syntax to NONMEM syntax |
| rxUiGet.loadPruneNlmer | Load pruned nlmer model into symengine (no sensitivity promotion) |
| rxUiGet.loadPruneNlmerSens | Load pruned nlmer model into symengine (with sensitivity promotion) |
| rxUiGet.nlmerEnv | Full nlmer symengine environment with sensitivities |
| rxUiGet.nlmerFormula | Build the full 3-part nlmer formula |
| rxUiGet.nlmerHdTheta | Compute d(f)/d('THETA[i]') for all nlmer parameters |
| rxUiGet.nlmerModel0 | nlmer base model (saem-dropped etas, 'THETA[i]' prefix, nlme error lines) |
| rxUiGet.nlmerParams | params() string for the nlmer 'THETA[i]'-indexed model |
| rxUiGet.nlmerRandomFormula | Build the random-effects part (part 3) of the nlmer 3-part formula |
| rxUiGet.nlmerSensModel | Compiled nlmer sensitivity model (prediction + gradients) |
| rxUiGet.nlmerStart | Starting values for nlmer fixed effects |
| rxUiGet.nlmerThetaS | Compute d(state)/d('THETA[i]') sensitivities for nlmer |
| rxUiGet.nlmerThetas | Get the structural params to estimate for nlmer (= saemParamsToEstimate) |
| saemixControl | Control for saemix estimation method in nlmixr2 |
| simplifyUnit | Simplify units by removing repeated units from the numerator and denominator |