Benchmarking Genomic Selection and Machine-Learning Prediction Models

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Documentation for package ‘GSbench’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

available_models	Models available in this session
gblup	Fit GBLUP by REML
Gmatrix	Genomic relationship matrix (VanRaden)
gs_benchmark	Benchmark all available genomic prediction models
gs_cv	Cross-validate genomic prediction models
gs_ensemble	Stacked super-learner ensemble of genomic prediction models
gs_fit	Fit a genomic prediction model
impute_markers	Impute missing marker genotypes
plot.gs_cv	Plot a model comparison
predict.gblup	Predict breeding values for new genotypes from a GBLUP fit
predict.gs_ensemble	Predict from a fitted genomic prediction model
predict.gs_model	Predict from a fitted genomic prediction model
qc_markers	Quality-control filter for marker data
simulate_population	Simulate a genomic prediction dataset
summary.gs_cv	Summary of a cross-validation / benchmark