Transcriptional Disruption Score for Gene Sets

Documentation for package ‘DSGEr’ version 1.3.1

calc_dsge	Compute DSGE (Disruption Score of Gene Expression)
dsge_perm_test	Permutation test for DSGE enrichment of a single gene set
get_gaf_header	Extract header lines from a GAF file
get_pathway_genes	Extract gene-pathway (GO term) associations from GAF data
get_pathway_genes_db	Build pathway-gene mapping from a Bioconductor OrgDb object
get_pathway_genes_kegg	Build KEGG pathway-gene mapping from a Bioconductor OrgDb object
get_pathway_genes_reactome	Build Reactome pathway-gene mapping from a Bioconductor OrgDb object
pathway_dsge	Pathway-level DSGE permutation test with FDR correction
plot_dsge	Plot null distribution vs. observed DSGE for selected pathways
plot_dsge_volcano	Gene-level volcano plot for a specific pathway
read_gaf	Read a Gene Ontology Annotation File (GAF)
read_obo	Read GO term names from an OBO file