Contains tools for supervised analyses of incomplete, overlapping
  multiomics datasets. Applies partial least squares in multiple steps to find
  models that predict survival outcomes. See Yamaguchi et al. (2023)
  <doi:10.1101/2023.03.10.532096>.

Aims at detecting single nucleotide variation
    (SNV) and insertion/deletion (INDEL) in circulating tumor DNA (ctDNA), used
    as a surrogate marker for tumor, at each base position of an Next Generation
    Sequencing (NGS) analysis. Mutations are assessed by comparing the minor-allele
    frequency at each position to the measured PER in control samples.

Contains functions developed to combine the results of querying a plasmid database using
    short-read sequence typing with the results of a blast analysis against the query results.

Tools for interacting with data from experiments done in microtiter
    plates. Easily read in plate-shaped data and convert it to tidy format, 
    combine plate-shaped data with tidy data, and view tidy data in plate shape.

Collection of functions for working with multi-well microtitre
    plates, mainly 96, 384 and 1536 well plates.

Design parameters of the optimal two-period multiarm platform design
    (controlling for either family-wise error rate or pair-wise error rate) can be calculated
    using this package, allowing pre-planned deferred arms to be added during the trial. More
    details about the design method can be found in the paper: Pan, H., Yuan, X. and Ye, J.
    (2022) "An optimal two-period multiarm platform design with new experimental arms added
    during the trial". Manuscript submitted for publication. For additional references: Dunnett,
    C. W. (1955) <doi:10.2307/2281208>.

Data and analysis from an experiment with improving touch 
    typing speed, using the tDCS PlatoWork headset produced by PlatoScience.

It creates a lattice plot to visualize panel or longitudinal data. The observed values are plotted as dots and the fitted values as lines, both against time. The plot is customizable and easy to edit, even if you do not know how to construct a lattice plot from scratch.