Depends: R (>= 2.14.0)
Imports: survival, splines, corpcor, fda, R.methodsS3, gnm

Depends: R (>= 4.0.0), Seurat (>= 4.3.0.1)
Imports: circlize, cli (>= 3.2.0), cowplot, data.table, dplyr, forcats,
ggbeeswarm, ggplot2, ggprism, ggrastr, ggrepel, glue,
grDevices, grid, janitor, lifecycle, magrittr, Matrix (>=
1.5.0), methods, paletteer, patchwork, pbapply, purrr, rlang
(>= 1.1.3), scales, scattermore (>= 1.2), SeuratObject (>=
5.0.0), stats, stringi, stringr, tibble, tidyr
Suggests: BiocFileCache, ComplexHeatmap, dittoSeq, DropletUtils,
ggpubr, hdf5r, knitr, Nebulosa, remotes, reticulate, rliger,
rmarkdown, scuttle, tidyselect, qs, viridis

Depends: R (>= 3.6.0)
Imports: checkmate, DBI, dbplyr (>= 2.4.0), dplyr, glue, methods,
openssl, parallelly, purrr, rlang, R6, stringr, tidyr,
tidyselect, utils, magrittr
Suggests: callr, conflicted, devtools, duckdb (>= 0.10.1), ggplot2,
here, jsonlite, knitr, lintr, microbenchmark, odbc, pak,
rmarkdown, roxygen2, pkgdown, RPostgres, RSQLite, spelling,
testthat (>= 3.0.0), tibble, tidyverse, withr

Depends: dplyr, edgeR, foreach, ggplot2, R (>= 2.10), Seurat
Imports: data.table, gtools, harmony, MASS, Matrix, NMF, reshape2,
Biobase, mgcv, grDevices, glmGamPoi
Suggests: FARDEEP, reticulate, plotly, DESeq2, knitr, limma, nnls,
preprocessCore, rmarkdown, scater, scran, SingleCellExperiment,
doFuture, future, sctransform, Linnorm

Depends: R (>= 3.4)
Imports: matrixStats, foreach, doParallel, igraph, Matrix, uwot,
cluster, Rcpp, RcppParallel, RcppAnnoy, methods, torch (>=
0.3.0), RhpcBLASctl, coro
LinkingTo: Rcpp, RcppArmadillo, RcppParallel, RcppAnnoy
Suggests: testthat, knitr, mclust

Depends: nlme, R (>= 3.0.1)
Imports: stats, utils, readxl, rlang, dplyr, tidyselect, magrittr,
lmeInfo (>= 0.3.0)
Suggests: knitr, markdown, rmarkdown, ggplot2, plyr, boot, parallel,
shiny, shinytest, glue, janitor, rclipboard, rvest, testthat

Depends: R (>= 4.0.0)
Imports: data.table, DelayedArray, future, future.apply, lifecycle,
magrittr, methods, Seurat (>= 5.0.0), stats, utils
Suggests: biomaRt, covr, DT, ggplot2, GOSemSim, igraph, kableExtra,
KEGGREST, knitr, ontologyIndex, ontoProc, pkgdown, plotly,
RColorBrewer, rmarkdown, rrvgo, spelling, shiny, shinythemes,
shinyWidgets, testthat (>= 3.0.0), visNetwork