Imports: htmlwidgets, partitions, venn, utils
Suggests: shiny

Suggests: htmltools (>= 0.5), knitr (>= 1.36), rmarkdown (>= 2.17),
testthat (>= 3.0.0), withr

Depends: R (>= 3.3.0), Rcpp (>= 0.11.3), VGAM, methods, mvtnorm
LinkingTo: Rcpp
Suggests: knitr, Hmisc, coda, testthat, lmodel2, markdown

Depends: ape, DESeq2, ggplot2
Imports: ggrepel, pheatmap, lookup, plyr, data.table, rafalib,
RColorBrewer, methods, graphics

Depends: R (>= 3.0.2)
Imports: graphics, stats, car, colorspace, fda, splines, grDevices

Depends: R (>= 4.4)
Imports: ggplot2, dplyr, tidyr, ggridges, patchwork, moments, magrittr,
rlang, tidyselect, multcompView, stats,
Suggests: car, knitr, rmarkdown, testthat (>= 3.0.0)

Imports: stats, utils, httr (>= 1.2.0), jsonlite (>= 1.1), magrittr,
yaml
Suggests: testthat, knitr, ssh (>= 0.6), aws.s3, arrow

Imports: mgcv, MASS, stats, graphics, grid, brglm, princurve (>=
2.0.2), lattice

Depends: R (>= 4.4.0), R.matlab, fastICA, tcltk
Suggests: tkrplot

Imports: ggplot2, gridExtra, dplyr, grid
Suggests: data.table, testthat, tidyr, reshape2, rmarkdown, MASS,
shiny, nnet, knitr

Depends: aion (>= 1.4.0), R (>= 4.1)
Imports: arkhe (>= 1.10.0), graphics, grDevices, methods, utils
Suggests: folio, knitr, markdown, rsvg, svglite, tinysnapshot, tinytest

Depends: R (>= 3.50)
Imports: dplyr, ggplot2, ggpubr, magrittr, patchwork, png, purrr,
rlang, Seurat, stringr, utils,
Suggests: covr, knitr, rmarkdown, Signac, testthat (>= 3.0.0)

Imports: svd(>= 0.3.3-2), parallel(>= 3.2.1), grDevices, graphics,
stats, utils

Imports: glmnet (>= 1.4), selectiveInference (>= 1.0.0), mgcv (>= 1.0)

Suggests: pcalg, MASS, igraph, testthat (>= 3.0.0)

Suggests: covr, knitr, mockery, stringi, testthat (>= 3.0.0), withr

Suggests: knitr, rmarkdown, robustbase, mclust

Depends: dplyr
Imports: DBI, zip, methods, dbplyr, tidyselect, cli, rlang, pillar,
duckdb (>= 1.3.0)
Suggests: testthat, stringr, knitr, rmarkdown, tibble, rJava, rcmdcheck

Depends: R (>= 3.5.0)
Imports: signal, tidyr, ggplot2, cowplot, rlang, utils, plyr
Suggests: extrafont, dplyr, knitr, rmarkdown, testthat, MASS