Suggests: CIARA, rmarkdown, testthat (>= 3.0.0), knitr

Depends: R (>= 3.5.0)
Imports: doParallel, foreach, iterators, parallel

Depends: R (>= 3.5.0)
Imports: data.table (>= 1.10.0), ggplot2, gridExtra, foreach,
doParallel, parallel, openxlsx, stringi, cli, xml2, xefun (>=
0.1.3)
Suggests: knitr, rmarkdown, pkgdown, testthat

Imports: car, e1071, gbm, partykit, randomForest, reshape2, sqldf,
stringr, stats, ggplot2, utils

Imports: Rcpp (>= 1.0.12), Rfast, igraph
LinkingTo: Rcpp
Suggests: Rfast2, knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.5.0)
Imports: RcppEigen (>= 0.3.3.7), MCMCpack, optimx, FixedPoint, Rdpack,
Rcpp (>= 1.0.9), methods, stats, utils, rlang (>= 1.1.0)
LinkingTo: Rcpp (>= 1.0.9), RcppEigen (>= 0.3.3.7)
Suggests: testthat, ks, movMF, cubature, simdd, numDeriv

Depends: R (>= 3.5.0)
Imports: checkmate (>= 1.9.1), Rcpp (>= 1.0.0)
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (>= 2.0.0), cluster

Depends: R (>= 3.00)
Imports: Rcpp (>= 0.12.0), methods, MASS, knitr
LinkingTo: Rcpp, RcppArmadillo
Suggests: gsl (>= 1.8-3), hypergeo(>= 1.0), rmarkdown, testthat, crch,
ggplot2

Depends: R (>= 4.1)
Imports: checkmate, cli, data.table (>= 1.16.0), ggplot2 (>= 3.4.0),
methods, Metrics, purrr, scoringRules (>= 1.1.3), stats
Suggests: ggdist, kableExtra, knitr, magrittr, rmarkdown, testthat (>=
3.1.9), vdiffr

Imports: Matrix, survival, pracma, foreach, doParallel, parallel, Rcpp

Imports: cli, methods, irlba, igraph, RANN, Matrix, pbapply

Depends: R (>= 3.5.0)
Imports: dplyr, dynutils (>= 1.0.3), dynwrap, grDevices, ggplot2 (>=
2.0), lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap,
princurve (>= 2.1.4), purrr, ranger, RANN, RColorBrewer,
reshape2, stats, tidyr, TSP
Suggests: anndata, covr, knitr, reticulate, rmarkdown, Seurat,
SingleCellExperiment, testthat (>= 2.1.0)

Imports: glasso, stats, grDevices, graphics
Suggests: lars

Suggests: testthat (>= 3.0.0), shinytest2

Depends: R (>= 3.5.0), ggplot2, ggpubr, stats

Imports: Seurat, dplyr, rdist, energy, stats

Imports: Seurat, batchelor, dplyr, ReactomeGSA, celldex, SingleR,
SummarizedExperiment, biomaRt, magrittr, rlang
Suggests: knitr, rmarkdown