Depends: R (>= 3.5.0)
Imports: ncdf4, maps, PBSmapping, grDevices, splancs, sp, geosphere,
graphics, methods

Imports: stats, glmnet, GenomicRanges, IRanges, Biostrings, dplyr,
BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38

Depends: R (>= 4.0.0)
Imports: MatrixCorrelation, ProjectionBasedClustering, stats, umap
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: glmnet, foreach, methods, iterators, doParallel, Matrix

Suggests: kableExtra, knitr, rmarkdown, testthat (>= 3.0)

Imports: Rcpp, methods, R6, ROOPSD (>= 0.3.5), transport

Imports: Rcpp (>= 0.12.2), Matrix, discretization

Imports: poLCA, R.oo (>= 1.20.0), R.methodsS3, mclust, igraph (>=
1.0.1), Rcpp (>= 0.12.3), combinat, flexmix, hash
LinkingTo: Rcpp
Suggests: testthat, mvtnorm, knitr, MASS

Suggests: devtools, dplyr, ggplot2, knitr, magrittr, pomp, rmarkdown,
tidyr

Depends: R (>= 3.5.0)
Imports: alluvial, magrittr, dplyr, purrr, blockmodels, R6, Rcpp,
igraph, ggplot2, GREMLINS, stringr, rlang, reshape2, prodlim
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, spelling, knitr, rmarkdown, aricode, covr

Imports: Rcpp, Rdpack, expm, stats, utils

Depends: R (>= 3.5.0)
Imports: Rcpp, rlang, tidyr, dplyr, utils, stats, graphics
LinkingTo: Rcpp, testthat
Suggests: ggplot2, knitr, rmarkdown, cli, testthat, covr

Imports: Rcpp (>= 0.12.4), arules, methods
LinkingTo: Rcpp

Imports: jsonlite, curl, httr (>= 1.0.0), methods, mime, utils, cli,
keyring, tools
Suggests: testthat, xml2, sf, knitr, rmarkdown

Depends: R (>= 3.2), Matrix, quadprog, slam
Enhances: gurobi, Rcplex, Rmosek, pogs, osqp

Suggests: rmarkdown, knitr, httptest, ggplot2, testthat

Imports: Rcpp (>= 1.0.9), parallel, bayesm

Depends: R (>= 4.1)
Imports: cli, farver (>= 2.0.3), glue, labeling, lifecycle, R6,
RColorBrewer, rlang (>= 1.1.0), viridisLite
Suggests: bit64, covr, dichromat, ggplot2, hms (>= 0.5.0), stringi,
testthat (>= 3.0.0)

Imports: mgcv (>= 1.8-2), methods, stats, graphics, Matrix, splines

Depends: R (>= 4.1.0)
Imports: stats, nlme, MCMCglmm, utils, methods, graphics, car, gt,
knitr, kableExtra, readxl, mblm, magrittr, miniUI, rstudioapi
Suggests: testthat (>= 3.0.0), shiny, yaml, scplot