Imports: Matrix, capushe, shiny, utils, methods, Rcpp, grDevices,
graphics
LinkingTo: Rcpp

Depends: R (>= 3.3.3)
Imports: boot, glmnet, mgcv, ggplot2, zoo, reshape2, stats, utils,
grDevices, broom, dplyr, graphics

Depends: R (>= 3.5.0)
Imports: MASS, Matrix, fastDummies, doSNOW, dplyr, grplasso, foreach,
glmnet, grpreg, inline, mvtnorm, pROC, parallel, RcppArmadillo,
rsvd, methods
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: DiagrammeR (>= 0.6), dplyr (>= 0.4.1), stringr (>= 0.6.2)

Depends: R (>= 4.0.0)
Imports: data.table (>= 1.13.0), dplyr, fgsea (>= 1.0.2), ggplot2,
ggraph (>= 2.0.3), magrittr (>= 2.0.3), methods, parallel (>=
4.0.2), plyr (>= 1.8.4), Rcpp, readr, rlang, scales, stats,
stringi, tibble, tidygraph, tidyverse
LinkingTo: Rcpp
Suggests: devtools, knitr, rmarkdown, testthat (>= 3.1.4)

Depends: R (>= 4.1.0)
Imports: geozoo, tibble, ggplot2, tidyr, dplyr, purrr, stats, methods
Suggests: tourr, ggdendro, colorspace, mclust, kohonen, GGally

Imports: igraph (>= 1.3.5.9097), rgl (>= 1.0.0), randomcoloR, graphics,
stats
Suggests: knitr, rmarkdown

Depends: R (>= 3.5.0)
Imports: mvtnorm, stats, matrixStats, utils, lme4

Imports: ellipse, ggplot2, ggrepel, stats

Depends: R (>= 4.0.0)
Imports: MASS, scales, geometry, deldir, mirt, GPArotation, Hmisc, car,
dunn.test, gplots, lattice, polycor, dae, xtable, mvtnorm,
psych, ThreeWay, knitr

Depends: stats, graphics, mvtnorm (>= 1.0-10), survival (>= 2.39-4),
TH.data (>= 1.0-2)
Imports: sandwich (>= 2.3-0), codetools
Suggests: lme4 (>= 0.999375-16), nlme, robustbase, coin, MASS, foreign,
xtable, lmtest, coxme (>= 2.2-1), SimComp, ISwR, tram (>=
0.2-5), fixest (>= 0.10), glmmTMB, DoseFinding, HH, asd,
gsDesign, lattice

Suggests: spelling, knitr, formatR, rmarkdown, testthat (>= 3.0.0)

Imports: doParallel, foreach, plyr, methods

Depends: R (>= 4.3.0)
Imports: cowplot, ggplot2, hablar, magic, neldermead, pracma
Suggests: readxl, knitr, rmarkdown, bookdown, kableExtra, magrittr

Suggests: testthat, knitr, rmarkdown, MCMCpack, ggplot2, matrixStats,
plotrix