Automate the detection of gaps and elevations in mapped sequencing 
  read coverage using a 2D pattern-matching algorithm. 'ProActive' detects, characterizes 
  and visualizes read coverage patterns in both genomes and metagenomes. Optionally, 
  users may provide gene annotations associated with their genome or metagenome 
  in the form of a .gff file. In this case, 'ProActive' will generate an additional 
  output table containing the gene annotations found within the detected regions of gapped 
  and elevated read coverage. Additionally, users can search for gene 
  annotations of interest in the output read coverage plots.

A collection of tools to facilitate standardized analysis 
    and graphical procedures when using the National Cancer Institute’s 
    Patient-Reported Outcomes version of the Common Terminology Criteria for 
    Adverse Events (PRO-CTCAE) and other PRO measurements.

Models can be improved by post-processing class
    probabilities, by: recalibration, conversion to hard probabilities,
    assessment of equivocal zones, and other activities. 'probably'
    contains tools for conducting these operations as well as calibration
    tools and conformal inference techniques for regression models.

Functions and datasets  to accompany J. Albert and J. Hu, "Probability and Bayesian Modeling", CRC Press, (2019, ISBN: 1138492566).

Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.