Imports: ggplot2, ggthemes, ggrepel, scales

Depends: R (>= 3.4)
Imports: dplyr, rvest, stringr, jsonlite, readr, openxlsx, utils,
magrittr
Suggests: testthat (>= 3.0.0), devtools, roxygen2, covr, usethis

Depends: R (>= 3.0)
Imports: assertthat (>= 0.1), R6 (>= 2.1.1), parallel, stats, utils
Suggests: boot (>= 1.3-10), coala (>= 0.2.1), knitr, rmarkdown,
testthat (>= 0.11.0)

Depends: R (>= 3.5.0)
Suggests: tm, stringi, bracer, mgsub, qdapRegex, stringr, data.table,
xmlconvert, jsonlite, anytime, cffr, rbibutils, install.load

Imports: Rcpp (>= 0.12.6), qvalue, dplyr, magrittr
LinkingTo: Rcpp

Depends: qspray (>= 3.1.0), ratioOfQsprays (>= 1.1.0), symbolicQspray
(>= 1.1.0)
Imports: DescTools, gmp, methods, multicool, mvp, partitions,
RationalMatrix, Rcpp, spray, syt (>= 0.5.0), utils
LinkingTo: BH, qspray, ratioOfQsprays, Rcpp, RcppCGAL, symbolicQspray
Suggests: testthat

LinkingTo: Rcpp, RcppArmadillo, RcppProgress, Rhtslib
Suggests: coala, knitr, markdown, rmarkdown, scrm, testthat

Imports: doFuture, foreach, future, future.apply, stats, utils
Suggests: spelling

Imports: fBasics, Benchmarking, dplyr, ggplot2, foreach, doParallel,
reshape, tidyr, scales, parallel, graphics, plyr, rlang, utils

Imports: methods, stats, corpcor, irlba, rsvd, ClusterR, cluster,
BEDMatrix, genio (>= 1.0.15.9000)

Imports: Carlson, Rcpp (>= 1.0.8), rgl, Rvcg
LinkingTo: Rcpp
Suggests: testthat (>= 3.0.0), elliptic, RcppColors

Suggests: stats, knitr, dplyr, tidyr, ggplot2, rbenchmark, rmarkdown

Imports: pracma, data.table, mvtnorm, stats

Imports: coda (>= 0.13), graphics, grDevices, parallel, rjags (>=
3-13), stats, utils

Depends: R (>= 3.0.0)
Imports: methods, grDevices, graphics, stats, utils, colorspace,
RColorBrewer, KernSmooth, withr
Suggests: crayon, farver, knitr, rmarkdown, testthat (>= 3.0.0)
Enhances: ggplot2, ggridges, IRanges, S4Vectors, openxlsx, kableExtra,
matrixStats, viridisLite, ComplexHeatmap, circlize,
GenomicRanges, igraph, pryr, rstudioapi, Matrix,
sparseMatrixStats

Depends: R (>= 4.1.0)
Imports: Rcpp (>= 1.0.10), Matrix, extraDistr, mclust, scales, aricode,
stringdist, utils, splines, rlang, future.apply, future,
progressr, progress, igraph, methods
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)