Provides path_chain class and functions, which facilitates loading and saving 
             directory structure in YAML configuration files via 'config' package. 
             The file structure you created during exploration can be transformed 
             into legible section in the config file, and then easily loaded for further usage.

Enrichment analysis enables researchers to uncover mechanisms 
    underlying a phenotype. However, conventional methods for enrichment 
    analysis do not take into account protein-protein interaction information, 
    resulting in incomplete conclusions. 'pathfindR' is a tool for enrichment 
    analysis utilizing active subnetworks. The main function identifies active 
    subnetworks in a protein-protein interaction network using a user-provided 
    list of genes and associated p values. It then performs enrichment analyses 
    on the identified subnetworks, identifying enriched terms (i.e. pathways or, 
    more broadly, gene sets) that possibly underlie the phenotype of interest.
    'pathfindR' also offers functionalities to cluster the enriched terms and 
    identify representative terms in each cluster, to score the enriched terms 
    per sample and to visualize analysis results. The enrichment, clustering and 
    other methods implemented in 'pathfindR' are described in detail in 
    Ulgen E, Ozisik O, Sezerman OU. 2019. 'pathfindR': An R Package for 
    Comprehensive Identification of Enriched Pathways in Omics Data Through 
    Active Subnetworks. Front. Genet. <doi:10.3389/fgene.2019.00858>.

This is a data-only package, containing data needed to run the CRAN 
    package 'pathfindR', a package for enrichment analysis utilizing active 
    subnetworks. This package contains protein-protein interaction network data, 
    data related to gene sets and example input/output data.

R API for 'Pathling', a tool for querying and transforming electronic health record data that is represented using the 'Fast Healthcare Interoperability Resources' (FHIR) standard - see <https://pathling.csiro.au/docs>.