Imports: assertthat, irlba, sva, pdist, matchingR, clue
Suggests: covr, testthat (>= 2.1.0), SummarizedExperiment, DESeq2,
knitr, rmarkdown, airway, limma, qvalue, edgeR

Depends: R (>= 3.5.0), TraMineR
Suggests: FactoMineR, descriptio, RColorBrewer, TraMineRextras,
WeightedCluster, ade4, cluster, questionr, rmdformats, dplyr,
purrr, ggplot2

Depends: R (>= 4.1.0)
Imports: checkmate, cli, collapse, data.table (>= 1.16.0),
future.apply, ggplot2, ggseqplot, graphics, grDevices, grid,
gridBase, igraph, lhs, Matrix, methods, nloptr, numDeriv,
patchwork, progressr, Rcpp (>= 0.12.0), RcppHungarian, rlang,
stats, TraMineR (>= 2.2-7), utils
LinkingTo: nloptr, Rcpp (>= 0.12.0), RcppArmadillo
Suggests: covr, knitr, MASS, nnet, testthat (>= 3.0.0),

Depends: R (>= 3.5.0)
Imports: Amelia, cluster, dfidx, doRNG, doSNOW, dplyr, foreach,
graphics, mlr, nnet, parallel, plyr, ranger, rms, stats,
stringr, TraMineR, TraMineRextras, utils, mice, parallelly
Suggests: R.rsp, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 2.15.1), foreach, doParallel
Suggests: testthat, doMC, rmarkdown, knitr

Depends: R (>= 3.6.0)
Imports: Biostrings, magrittr, stats, utils, yulab.utils (> 0.1.1)
Suggests: downloader, knitr, rmarkdown, GenomicAlignments,
GenomicRanges, IRanges, muscle, Rsamtools, prettydoc

Depends: R (>= 4.1)
Imports: data.table, doFuture, doRNG, fastglm, future, future.apply,
ggplot2, knitr, methods, stringr, survival, parallelly
Suggests: rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.5.0)
Imports: Rcpp (>= 0.12.18.3), RcppParallel (>= 5.1.3), R6, rlang,
dplyr, stringi
LinkingTo: Rcpp, RcppParallel, BH
Suggests: knitr, rmarkdown, stringdist, qs, Biostrings, pwalign,
igraph, ggplot2

Suggests: knitr, rmarkdown, ggplot2, gganimate, tidyr, dplyr, av

Imports: Rcpp (>= 0.12.18), RcppProgress (>= 0.4.1), selectiveInference
(>= 1.2.5)

Imports: methods, emdbook, truncdist, rlang
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.5.0)
Imports: plyr (>= 1.8.0), stats, utils, graphics, cli
Suggests: openxlsx, knitr, rmarkdown, bookdown, kinship2, R.rsp,
hexbin, data.table, vcfR, adegenet