Imports: Matrix, MASS, stats, methods, grDevices, graphics

Imports: Biostrings, gbm, GenomicRanges, BiocGenerics, IRanges,
GenomeInfoDb, S4Vectors, rtracklayer, stringr, vtreat, shiny,
DT

Depends: R (>= 3.6.0), caret
Imports: bnlearn, dplyr, evd, fitdistrplus, ggplot2, keras, magrittr,
parallel, reticulate, scales

Imports: dplyr, igraph, magrittr, R6, stringr, tibble
Suggests: DiagrammeR, knitr, rmarkdown, testthat

Imports: DiagrammeR, ggplot2, reshape2, dplyr, stringr

Depends: R (>= 4.0.0)
Imports: cowplot, dplyr, ggbeeswarm, ggplot2, ggpmisc, ggpubr, ggrepel,
magrittr, Matrix, methods, R6, scales, sccore,
sparseMatrixStats, stats, tibble, tidyr, utils
Suggests: conos, data.table, markdown, pagoda2, reticulate, rhdf5,
Seurat, SoupX, testthat (>= 3.0.0)

Depends: R (>= 2.10), pcaMethods (>= 1.56.0), Biobase, methods

Depends: R (>= 3.0.0), ggplot2 (>= 2.0.0), graphics
Imports: methods, grid, gridExtra, GenSA, mvtnorm, parallel, rjags,
utils, tools, MASS
Suggests: ggmcmc, knitr, Rcpp, RcppArmadillo

Depends: R (>= 3.5.0)
Imports: FNN, ggplot2, gplots, pcaPP, plyr, methods, robustbase, rrcov

Imports: shiny, shinydashboard, stringr, httr, dplyr, DT

Imports: digest
Suggests: miniUI, shiny (>= 0.11), shinyFiles (>= 0.6.0), tinytest

Depends: R (>= 3.2.0),
Imports: dplyr(>= 0.3.0.1), ggplot2(>= 3.3.2), terra, sf, tidyr, ncdf4

Depends: R (>= 4.2.0)
Imports: lubridate, dplyr, tibble, purrr, purrrlyr, httr
Suggests: rmarkdown, knitr, furrr, testthat (>= 3.0.0)

Imports: sets, reshape, tidyverse, memoise, ggplot2, magrittr, methods,
cowplot, tibble, Rdpack
Suggests: fpop, pacman

Imports: terra, tidyr, sf, ncdf4, ggplot2

Imports: dplyr, gee, ggplot2, splines, stats, MASS

Depends: R (>= 4.1)
Imports: checkmate, cli, cluster, crayon, dplyr, flip, mclust, purrr,
utils
Suggests: covr, devtools, lintr, roxygen2, spelling, testthat, usethis

Depends: R (>= 3.5.0)
Imports: Rfast, RANN, Matrix, ggplot2, dplyr, stats, stringr

Depends: R (>= 4.00)
Imports: cli, clustree, data.table, dbscan, dplyr, ggdist, ggplot2,
ggpp, gridExtra, gtable, magrittr, patchwork, rlang, scales,
tibble, tidyr
Suggests: covr, knitr, rmarkdown, testthat (>= 3.0.0), umap, vdiffr