Suggests: knitr, rmarkdown, testthat (>= 3.0.0), cowplot, ggplot2,
ggthemes, Matrix, uwot

Suggests: ggplot2, testthat, dplyr, covr

Imports: chromote, data.tree, dplyr, gitcreds, googledrive, magrittr,
methods, purrr, readxl, stringr, tibble, tidyr, tidyxl
Suggests: ecodist, knitr, lme4, lmerTest, nlme, rmarkdown, testthat (>=
3.0.0)

Imports: htmltools, knitr, rmarkdown, xfun
Suggests: testthat

Suggests: knitr, rmarkdown, covr, testthat, png

Depends: R (>= 2.10), recipes (>= 1.1)
Imports: dplyr, generics, magrittr, rlang, stats, tibble, tidyr
Suggests: ggplot2, knitr, rmarkdown, testthat (>= 3.0.0)

Imports: Rcpp, RANN, igraph, parallel, stats, stringr

Depends: R (>= 3.6)
Imports: dplyr, forcats, ggplot2, gghalves, purrr, stats, stringr,
tibble, tidyr, tidyselect
Suggests: spelling, htmlTable, knitr, rmarkdown

Imports: cluster, entropy, stats, utils, parallel, irlba, PINSPlus,
matrixStats, markdown

Imports: ape, dplyr, ggplot2, ggtree, igraph, parallelDist, patchwork,
phangorn, Rcpp, reshape2, RcppParallel, RhpcBLASctl, stringr,
tidygraph

Depends: R (>= 3.50)
Imports: ggplot2, MASS, nortest, reshape2, stringi

Depends: R (>= 4.0.0), Matrix
Imports: rTensor, ica, fgsea, circlize, reshape2, parallel,
ComplexHeatmap, ggplot2, mgcv, utils, Rcpp, RColorBrewer,
dplyr, edgeR, sva, stats, Rmisc, ggpubr, msigdbr, sccore, NMF
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Suggests: methods, knitr, rmarkdown, testthat, coda.base, grid,
simplifyEnrichment, WGCNA, cowplot, matrixStats, stringr, zoo,
rlang, AnnotationDbi, GO.db, conos, pagoda2, betareg, slam, tm

Imports: ellipse, grDevices, graphics, stats

Imports: cluster, stats, grDevices, class

Imports: ggplot2, pheatmap, graphics, Seurat, GSVA, stats, utils,
downloader, pcaMethods, grDevices, gProfileR, limSolve,
gprofiler2, pbapply, ADAPTS, reshape,

Imports: alakazam (>= 1.3.0), shazam (>= 1.2.0), data.table,
doParallel, dplyr (>= 1.0), foreach, methods, Rcpp (>=
0.12.12), rlang, scales, stats, stringi, tidyr (>= 1.0)

Depends: R (>= 3.00), behavr
Imports: data.table, readr, stringr, RSQLite, memoise
Suggests: testthat, covr, knitr, ggetho, zeitgebr