Depends: R (>= 2.10)
Imports: grDevices, methods, lme4, carData, MASS, kutils
Suggests: tables, Hmisc, car, mvtnorm, scatterplot3d, HH

Imports: DBI, R6, sodium
Suggests: covr, crayon, knitr, RMariaDB, testthat (>= 3.0.0),
rmarkdown, RPostgres, RSQLite

Suggests: knitr, testthat (>= 3.0.0), tibble

Depends: R (>= 4.2.0)
Imports: dplyr, httr, jsonlite, purrr, tidyr, rlang
Suggests: knitr, rmarkdown, tidyverse, magrittr, testthat (>= 3.0.0)

Depends: R (>= 4.1.0)
Imports: cli, dplyr, forcats, ggplot2, magrittr, purrr, rlang, stringr,
SummarizedExperiment, tibble, tidyr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: dplyr, glue, magrittr, purrr, rlang, stringr, tibble

Imports: stats, grDevices, graphics, splines, np, Matrix, moments,
nor1mix, spatstat.univar, lattice, MASS, pbivnorm, parallel

Imports: Rcpp (>= 0.11.1), methods, stats

Depends: R (>= 3.5.0), reportROC, pROC, stats

Imports: methods, graphics, grDevices, gplots, stats

Imports: numDeriv, quadprog, Matrix, rootSolve, matrixcalc

Suggests: knitr, testthat, rmarkdown, ggplot2, dplyr, tidyr, covr,
scales

Suggests: knitr, rmarkdown, xtable, rootSolve

Depends: R (>= 3.5.0)
Imports: ape (>= 5.0), cli (>= 3.0), fastmatch, grDevices, matrixStats,
Rdpack (>= 0.7), Rfast, stats, TreeDist (> 2.2.0), TreeTools
(>= 1.9.1.9003), utils,
Suggests: knitr, PlotTools, rmarkdown, spelling, testthat,

Imports: methods, registry (>= 0.5), slam, utils, checkmate

Imports: methods, stats, utils, ROI (>= 1.0-0), alabama (>= 1.0.1)

Imports: stats, methods, slam, ROI (>= 1.0-0), clarabel (>= 0.5.1)

Imports: methods, ROI (>= 0.3-0), Rcplex (>= 0.3-3), slam

Imports: methods, stats, utils, ROI (>= 1.0-0), DEoptim, DEoptimR (>=
1.0-10)

Imports: methods, slam, Matrix, ROI (>= 1.0-0), ECOSolveR (>= 0.5.4)

Imports: methods, ROI (>= 0.3-0), Rglpk (>= 0.6-2)

Imports: methods, ROI (>= 0.3-0), kernlab, slam

Imports: stats, methods, utils, ROI (>= 0.3-0), lpSolveAPI (>=
5.5.2.0-1)
Suggests: slam

Imports: stats, methods, utils, slam, ROI (>= 1.0-0)

Imports: stats, methods, utils, ROI (>= 1.0-0), xmlrpc2, xml2
Suggests: slam