a20a83974bbd5874320a8f3f886f3e15 *DESCRIPTION
0469593ea231cece92cb5e9f8ee6c5a1 *NAMESPACE
179d517f51b434acd9ab8337c169a7af *NEWS
8752bf557c39a0d018852f430a5b6603 *R/CAST.r
0d77e1a1e48806ca4fa24ac9ee53a708 *R/GRR_matrix.r
298c7d54268c40f1ee48b5e4b775a104 *R/NullObject_parameters.r
1e215259e657949704e90561e48d6e56 *R/Pi_matrix.r
243e2aaeda3e7d9192b86a0b9a13e008 *R/RAVA_FIRST.r
6369462750a8c94eb9e5910e599ec6fc *R/SKAT.r
201e59497e0c7762c643243dd1b33b4b *R/SKAT_NullObject.r
5fa458a982afff540d42b6ba49de64bc *R/SKAT_bootstrap.r
b83dc15d3a754c029b92b86b1da6b44e *R/SKAT_continuous.r
b35b3788b1029ab9ebd0bc536106bc10 *R/SKAT_permutations.r
8d64b17284d1c1d27b90f4e14f122466 *R/SKAT_theoretical.r
8fef508bc0b515b10bbde41cf5bc86ea *R/SKAT_theoretical1.r
f1eb65b01064d0db1260f9089edd373c *R/WSS.r
c4f8b798c404d2b8b38bf58091ca1dd4 *R/adjustedCADD_annotation.r
5a4b52c39fed04d004b1727e7821b6a3 *R/adjustedCADD_annotation_SNVs.r
3fdd19939a61243ca927c1e14dd4ccad *R/adjustedCADD_annotation_indels.r
a8b41d5ae9464bfb1a1e3d5334e2f06d *R/bed_matrix_split_genomic_region.r
fe02e9551f806c1ebb330ed731759846 *R/burden.r
d3bacbe22ceb06674446600b81532127 *R/burden_NullObject.r
f618584ee272050625e46f5b86d8b602 *R/burden_continuous.r
08132f9c880cd9e141024931f3e3389f *R/burden_continuous_subscores.r
c452738276ac4b20308a2009683cb355 *R/burden_mlogit.r
61e82dc331cc21f630c48e8150192e76 *R/burden_mlogit_subscores.r
abf1ef60da5a1e6560084631c92c1267 *R/burden_subscores.r
223cf3dbe12f793678c029af02edcc31 *R/burden_weighted_matrix.r
c2a7619bc6be44768fe190cbaf6257c6 *R/filter_adjustedCADD.r
b2ebdba819278f868517b6e9d9219eec *R/filter_rare_variants.r
6c059f9fae805a0c3a7fe529317a8dae *R/genotypic.freq.r
a0b433767b908160910e003f564841ab *R/get_parameters_pvalue_theoretical.r
66a985a190532d8605cc84ced8edf4f7 *R/get_rbm_thresholds.r
ba34248bc9a2d0e157af35f92de85427 *R/globals.R
a5544fa6c94f8dc03677f5c46fdfdbc0 *R/jaccard.r
18efe1f2141cadef12d8cf8877a06112 *R/matrix_products.r
b47b27f2ecab35e9c464cb529559f8f9 *R/multinomial.asso.freq.r
c6fd697e7c7de0e11ec002b39d3cf22f *R/new_bed_matrix.r
a7ec73c922f623e953bde27c1eb2d73a *R/or_matrix_fix.r
90c224a0fd44c4982ad5d872b061797d *R/or_matrix_fix_same_variant.r
7bbd5134b250bc23b2e7833e910956e7 *R/p_valeur_moments_liu.r
ab42e5e894c04d9c5bd619157bb21675 *R/random_bed_matrix_freqs.r
43c691547e215649f6f1c883683b05ec *R/random_bed_matrix_haplo.r
56e940e5ff8e97ac2114dfd6ce1504ec *R/rbm_GRR.r
99aa39cd166c52b85b47cf43fa518e87 *R/rbm_GRR_power.r
8d75147134ee520a64d6af5bbb39a5ba *R/rbm_haplos_power.r
bf0b49d7bc10f882dc1a7dfd8545f882 *R/set_CADDregions.r
8f886b6c875742a6e92c98cb6b474b87 *R/set_genomic_region.r
f65e783286eeec9f7f236b9ad0d943d7 *R/set_genomic_region_subregion.r
6f0661dbc991062419b64f5429b0b079 *R/sum_fst.r
940cb1011eeb9f39c4b579be30ac2e19 *R/zzz.r
2965b8674a7381ab4ef40de87b071958 *TODO
9271935f38da6e2fb1dee82fea6e1b73 *build/vignette.rds
0672ffdafd2a81e527e7a986ab16f08f *data/GnomADgenes.RData
77b9bfa2c1969542ed75eb649d508ec4 *data/Kryukov.rda
6321bee3e39853474ed348315c1fe2b6 *data/LCT.haplotypes.rda
d510d91adbb056520546a690f03ff44d *data/LCT.matrix.rda
e75bc2a628631d7d5076d4cc44776582 *data/Subregions_LCT_example.RData
a04cbaca21d519aa4478a133e54674a9 *data/datalist
b94ad977a7ee163872e4aeb4b743d598 *data/genes.b37.RData
6c16748a7e5558979c8051b1122013ff *data/genes.b38.RData
a9d5afbe4c6129511e212c80b61714c9 *inst/doc/Ravages_Simulations_vignette.R
edd3f73a3f2215dbed861204985d1d8a *inst/doc/Ravages_Simulations_vignette.Rmd
9ab21f69f8ad016194f360367941f461 *inst/doc/Ravages_Simulations_vignette.pdf
fa41c0406d90518ff58e9ef5b18fe8f2 *inst/doc/Ravages_vignette.R
e7387ae6fcd2603ed9ac024f76452973 *inst/doc/Ravages_vignette.Rmd
abb72d08d2e5784f854d07a79ec9b7dc *inst/doc/Ravages_vignette.pdf
b82cb78aa0a2243f64b4de6362fa2e71 *man/CAST.Rd
499a5c44dd2b4e9e21770cce16c935c4 *man/GRR.matrix.Rd
e748dc50139dd96bde42c8d8d083d022 *man/GnomADgenes.Rd
b0ce6bc3dbda4f516bdbb45ff593ca6b *man/Jaccard.Rd
d660c513320d9562d821256a0ae357ee *man/Kryukov.Rd
4be76925906e74eb7f089ffb84e182b9 *man/LCT.haplotypes.Rd
da0c83dd3c935c389cd9c8e0c4fdc83c *man/LCT.matrix.Rd
83d9ed42be7e4417ccc06c7d03c8e219 *man/NullObject.parameters.Rd
c6f8028b794abed1d87efe33a3fce64b *man/RAVA_FIRST.Rd
7f1c1d63ff52f7fbf8586850e47a5737 *man/SKAT.Rd
db847b1e8db0712405bdc5c450ab68f2 *man/SKAT.bootstrap.Rd
d5cdce206723063576371e34a1fdad74 *man/SKAT.continuous.Rd
5b3392c3937c6b534fc0784c77e1e5d1 *man/SKAT.permutations.Rd
810fee16e2c750c5453755210c35fa5e *man/SKAT.theoretical.Rd
2d9f2484af41ba8f5ff898f366ac9b85 *man/WSS.Rd
3fe44377b7227d9b2c5a0f00f4312b97 *man/adjustedCADD_annotation.Rd
2f521ff34cffb223fb3dac5f6c9d1b1b *man/adjustedCADD_annotation_SNVs.Rd
0fe916f1bfce9ea466ecb952b64b6d43 *man/adjustedCADD_annotation_indels.Rd
c6f2d90b42ebc9ccb01bcb723e279f1b *man/bed.matrix.split.genomic.region.Rd
7962ab88a23869fd478a4bed6f1dcff5 *man/burden.Rd
e11243cb83c6ff58df89c7e1ad18eb62 *man/burden.continuous.Rd
9ea0b8dc7fe42197b79a9d16ada9a8c9 *man/burden.continuous.subscores.Rd
0e86587c4802337fcea1328214e130bc *man/burden.mlogit.Rd
3c2add52bfd0c5843833528fc3271d91 *man/burden.mlogit.subscores.Rd
51f47aa378b3e6fcd783c7f7e097b653 *man/burden.subscores.Rd
5da392b12bf99a955bcfded444b1fa92 *man/burden.weighted.matrix.Rd
2e42462efc51c6db8a496ba4968464d7 *man/filter.rare.variants.Rd
19fcf2cd29bb162476cc0e3258bf8be0 *man/filter_adjustedCADD.Rd
7c00bab3f7fd3d8abe2b5ba25f65460d *man/genes.positions.Rd
2d9607aee662f9abb71754a6982379f2 *man/genotypic.freq.Rd
e51096d8a9831f77e9e4dea93821d989 *man/multinomial.asso.freq.Rd
6da4b0e9b88aac6de857ae2ea794b13c *man/rbm.GRR.Rd
0e9a788e452ca9e198bbd302ad417723 *man/rbm.GRR.power.Rd
277d6a815d29b6329b14fa9f06a3c1b1 *man/rbm.haplos.freqs.Rd
7983ff3419ca1d0fbffa63d94c88d16b *man/rbm.haplos.power.Rd
e7245a878185af856370a484e5485ecd *man/rbm.haplos.thresholds.Rd
a003c07fc2ceebc871ba944f5ebc01d1 *man/set.CADDregions.Rd
0c58a96bd0ab08e2925cabd94786eaa9 *man/set.genomic.region.Rd
fc03e5c60d6a61cde1857d4b2e8021fc *man/set.genomic.region.subregion.Rd
bd37b7981f26bfbc499d69362af9f0c0 *man/subregions.LCT.Rd
5e4c40bc12afdf043205dfb3dab137c4 *src/GPG.cpp
f846ad59efafd269177798f6a252a67d *src/GPG.h
2bc6951a4c63eab9224bde7571c0d5de *src/GPG2.cpp
435a457703fdd800b7809987954162d6 *src/Makevars
55b199b1036d8b84d504a507305363a7 *src/Makevars.win
866cabc91895020cdd6ef7e382a0320e *src/allelecounter.cpp
fa91d4aebf30b27a7adc7cecaf4a89b7 *src/allelecounter.h
d630639a623d4b5395b5c9c607bb8a20 *src/allelecounter2.cpp
875acda540146ad327fde3349686cadb *src/allelecounter2.h
85a8f0d653dc078401e69aa362b33152 *src/alleles_by_group.cpp
de71d24837c1840b71331e674000d5cf *src/block_diag.cpp
fb5da6185035214101f01503dbea151f *src/burden.cpp
9416560ce670cf0d82c488b2c9446166 *src/colsums.cpp
2d29f9981e98873b70d3f598cc17b56b *src/count_alternative_alleles.cpp
0002b170814ccd09c59136e30b401863 *src/itere_combinaisons.cpp
7ba1b078f78aba636e943712633e366d *src/itere_combinaisons.h
00631598beb89b3b79f73ced5813b01f *src/jaccard.cpp
9d3211bf481847409a9cebe26ecbd773 *src/label_genes.cpp
470d5f7b18fdc415a300ab874d8096da *src/label_multiple_genes.cpp
33221db4906b3e1e0adbebfac189dc09 *src/m4_stats.cpp
e3ab65750807a3131faee07560e7b47e *src/matrix4.cpp
f7a6c5393fe0d739a72e2932ae5f99ec *src/moments.cpp
d6cb5b42930089eade1d07e54d075155 *src/polytomic_haplotype_proba.h
a6fb36654d733f0eef09183395eb45c6 *src/random_bed_matrix.cpp
c5ac56f260c645b39c4a0b57afe542ec *src/ravages_init.c
b4748b063afe4c4de3779b7fa355e1c9 *src/rbm_haplos_freqs.cpp
481e7db3961eced6e49127ecc9b2278d *src/rbm_haplos_thresholds.cpp
1fb28747b6c571993e23ac97ad79ce1d *src/rbm_haplos_thresholds_filling.cpp
f6729ce16cf5df0d63ee3814752cdcd8 *src/skat.cpp
7ee3a3ccb84cb826a5fb53c1c84ce309 *src/skatBootstrap.cpp
387e6cb5edc219cee1152843d61c0400 *src/skatMoments.cpp
5841f3f3c142e67890b9fb682522318f *src/skatStats.cpp
3eae8abd1577c79e5f5df735079704a9 *src/statistics_class.h
68b1536cb2a74246126c0d72e8821f40 *src/sum_by_group.cpp
74105b5d380486b52ab8c3cf35ab9e0f *src/sum_fst.cpp
5a0fbcba6dc721f1326b4d8463747e97 *src/sum_fst1.cpp
5fe3eb60b8b0473a220481922f95e6eb *src/weightedGenotypes.cpp
eae579c3476a10a25ea9e0bd30b69f82 *src/weightedGenotypes.h
d69038be66a8f6dec8e5ca6b0132ed2c *src/weighted_left_product.cpp
0f7af645d409035cee6cbb404e0b804a *src/weighted_left_product.h
eda5fcea1e160e71b82a200f65f3d283 *src/weighted_left_product2.cpp
edd3f73a3f2215dbed861204985d1d8a *vignettes/Ravages_Simulations_vignette.Rmd
e7387ae6fcd2603ed9ac024f76452973 *vignettes/Ravages_vignette.Rmd
