bcc8485a7fe58b8903a88916da0a9b50 *DESCRIPTION
0469593ea231cece92cb5e9f8ee6c5a1 *NAMESPACE
b9364ac5f3d50835017a57c4618fa3a5 *NEWS
8752bf557c39a0d018852f430a5b6603 *R/CAST.r
0d77e1a1e48806ca4fa24ac9ee53a708 *R/GRR_matrix.r
298c7d54268c40f1ee48b5e4b775a104 *R/NullObject_parameters.r
1e215259e657949704e90561e48d6e56 *R/Pi_matrix.r
144d2001b55ca76b9fef35d3f8ad5286 *R/RAVA_FIRST.r
6369462750a8c94eb9e5910e599ec6fc *R/SKAT.r
201e59497e0c7762c643243dd1b33b4b *R/SKAT_NullObject.r
5fa458a982afff540d42b6ba49de64bc *R/SKAT_bootstrap.r
b83dc15d3a754c029b92b86b1da6b44e *R/SKAT_continuous.r
b35b3788b1029ab9ebd0bc536106bc10 *R/SKAT_permutations.r
8d64b17284d1c1d27b90f4e14f122466 *R/SKAT_theoretical.r
8fef508bc0b515b10bbde41cf5bc86ea *R/SKAT_theoretical1.r
f1eb65b01064d0db1260f9089edd373c *R/WSS.r
5ad6f8fb5a558f7d4d47ac86e616383d *R/adjustedCADD_annotation.r
9d536f6f60fdc64998b1648d4e637700 *R/adjustedCADD_annotation_SNVs.r
d13e51aa1e41d5093122a461a0e0d8d1 *R/adjustedCADD_annotation_indels.r
a8b41d5ae9464bfb1a1e3d5334e2f06d *R/bed_matrix_split_genomic_region.r
fe02e9551f806c1ebb330ed731759846 *R/burden.r
838fc8f922fc95624f58b96e8b66d1e0 *R/burden_NullObject.r
f618584ee272050625e46f5b86d8b602 *R/burden_continuous.r
08132f9c880cd9e141024931f3e3389f *R/burden_continuous_subscores.r
3098060c5612fe1841725213d1ef223a *R/burden_mlogit.r
d72996ed940a689d64de44e2f1c2bee9 *R/burden_mlogit_subscores.r
abf1ef60da5a1e6560084631c92c1267 *R/burden_subscores.r
223cf3dbe12f793678c029af02edcc31 *R/burden_weighted_matrix.r
ff0ced7312345808513ae0ae60bd1a2d *R/filter_adjustedCADD.r
b2ebdba819278f868517b6e9d9219eec *R/filter_rare_variants.r
6c059f9fae805a0c3a7fe529317a8dae *R/genotypic.freq.r
a0b433767b908160910e003f564841ab *R/get_parameters_pvalue_theoretical.r
66a985a190532d8605cc84ced8edf4f7 *R/get_rbm_thresholds.r
ba34248bc9a2d0e157af35f92de85427 *R/globals.R
a5544fa6c94f8dc03677f5c46fdfdbc0 *R/jaccard.r
18efe1f2141cadef12d8cf8877a06112 *R/matrix_products.r
a3cf5f5881721348928d46b8b4da30c3 *R/multinomial.asso.freq.r
c6fd697e7c7de0e11ec002b39d3cf22f *R/new_bed_matrix.r
a7ec73c922f623e953bde27c1eb2d73a *R/or_matrix_fix.r
90c224a0fd44c4982ad5d872b061797d *R/or_matrix_fix_same_variant.r
7bbd5134b250bc23b2e7833e910956e7 *R/p_valeur_moments_liu.r
ab42e5e894c04d9c5bd619157bb21675 *R/random_bed_matrix_freqs.r
43c691547e215649f6f1c883683b05ec *R/random_bed_matrix_haplo.r
bc02e9d8f41c51084291f94947a1967e *R/rbm_GRR.r
99aa39cd166c52b85b47cf43fa518e87 *R/rbm_GRR_power.r
8d75147134ee520a64d6af5bbb39a5ba *R/rbm_haplos_power.r
69e92f2604bb481dabfcad936344ee5e *R/set_CADDregions.r
8f886b6c875742a6e92c98cb6b474b87 *R/set_genomic_region.r
f65e783286eeec9f7f236b9ad0d943d7 *R/set_genomic_region_subregion.r
6f0661dbc991062419b64f5429b0b079 *R/sum_fst.r
940cb1011eeb9f39c4b579be30ac2e19 *R/zzz.r
2965b8674a7381ab4ef40de87b071958 *TODO
6c5434b6c791416b503b134cd3cac3ec *build/vignette.rds
a744325a90d8fce6a31aedc89d7474e2 *data/GnomADgenes.RData
4295c5f04b8e257440dfe527711d16e4 *data/Kryukov.rda
2d580c5c8d2450b84a659aacb2ace4ce *data/LCT.haplotypes.rda
61e8e015a4cb319f34ccb0d8d4125958 *data/Subregions_LCT_example.RData
191b764ba2046446b6e2bb6f1483ee12 *data/genes.b37.RData
c6d3c2bd9097428af0da437ce7ca98e9 *data/genes.b38.RData
a9d5afbe4c6129511e212c80b61714c9 *inst/doc/Ravages_Simulations_vignette.R
4d1eb6ff5f398458fe43df2cd53602fc *inst/doc/Ravages_Simulations_vignette.Rmd
3f65f8afa0199b9510db3a43df1573ee *inst/doc/Ravages_Simulations_vignette.pdf
3d685f65587933d6f181eb2ec906101f *inst/doc/Ravages_vignette.R
eb334b93ea485c7b553f8651464941fa *inst/doc/Ravages_vignette.Rmd
f13a8335e70eb83e028616abacb0935e *inst/doc/Ravages_vignette.pdf
d12efd1e639a664ed03b89107461ad08 *inst/extdata/LCT.EUR.b37.bed
3955c95a954a3124b87d56a8ec1d6909 *inst/extdata/LCT.EUR.b37.bim
8c6463c0d8f32f975cdc423b1b80a951 *inst/extdata/LCT.EUR.b37.fam
827d1b59c139a114102037201f8c0dd1 *inst/extdata/LCT.EUR.b37.rds
d49093078639e793574e02a3dabe2890 *inst/extdata/LCT.EUR.b38.bed
d151be78e348d6405b10b9c182e94823 *inst/extdata/LCT.EUR.b38.bim
8c6463c0d8f32f975cdc423b1b80a951 *inst/extdata/LCT.EUR.b38.fam
e450481bcc90dc55e2df8b31a641bd46 *inst/extdata/LCT.EUR.b38.rds
f19242bfb88302ac9f43b1f2592ebc58 *inst/extdata/LCT.b38.indels.CADDv1.6.Annotated.tsv
a0bcc5b676f75840447ed6c044efaafe *man/CAST.Rd
499a5c44dd2b4e9e21770cce16c935c4 *man/GRR.matrix.Rd
e748dc50139dd96bde42c8d8d083d022 *man/GnomADgenes.Rd
b0ce6bc3dbda4f516bdbb45ff593ca6b *man/Jaccard.Rd
d660c513320d9562d821256a0ae357ee *man/Kryukov.Rd
b894969c91bab790a6e73c5c54f794c4 *man/LCT.EUR.Rd
20b814492bc36533ae2d290a64f92e1a *man/LCT.haplotypes.Rd
83d9ed42be7e4417ccc06c7d03c8e219 *man/NullObject.parameters.Rd
096a4e505c53027988792f5e3b28b29f *man/RAVA_FIRST.Rd
1a27d499a7ca06201d9947b2baefcff6 *man/SKAT.Rd
900315cc7cceae0a5c26afa92dc0c56b *man/SKAT.bootstrap.Rd
447c5d92a2b5019609035a447946e48a *man/SKAT.continuous.Rd
25184aa256f5d268aaa82d4672c2f14f *man/SKAT.permutations.Rd
aef54eedaeea709453a77a7d6cdb3c0e *man/SKAT.theoretical.Rd
1c5412f188e3fe640faafa8965058c07 *man/WSS.Rd
14412de1da28ca1270bdcedfba8938d1 *man/adjustedCADD_annotation.Rd
9b7b9077953a6901c35a197b78cfc76d *man/adjustedCADD_annotation_SNVs.Rd
352ff9b9781999363933375e34ae492a *man/adjustedCADD_annotation_indels.Rd
c6f2d90b42ebc9ccb01bcb723e279f1b *man/bed.matrix.split.genomic.region.Rd
cef50fdb0c467bc567e82adf80bbc4a6 *man/burden.Rd
e2441b47953b7396b67466d1aa00d2ee *man/burden.continuous.Rd
932825e68059c0ace540d2ef6097175f *man/burden.continuous.subscores.Rd
696caea938ef855390d771ff091ed0a6 *man/burden.mlogit.Rd
9ce554d90e88f762026a5353510ae783 *man/burden.mlogit.subscores.Rd
cc68be7a5b468d260dd6c2c5806489f6 *man/burden.subscores.Rd
d2de4a72e1c1b500f946fed43fff5a32 *man/burden.weighted.matrix.Rd
2e42462efc51c6db8a496ba4968464d7 *man/filter.rare.variants.Rd
e0246a87277e84782726fecce85617cb *man/filter_adjustedCADD.Rd
7c00bab3f7fd3d8abe2b5ba25f65460d *man/genes.positions.Rd
2d9607aee662f9abb71754a6982379f2 *man/genotypic.freq.Rd
9c5824f0ec029df5b987755290e12ee7 *man/multinomial.asso.freq.Rd
6da4b0e9b88aac6de857ae2ea794b13c *man/rbm.GRR.Rd
0e9a788e452ca9e198bbd302ad417723 *man/rbm.GRR.power.Rd
277d6a815d29b6329b14fa9f06a3c1b1 *man/rbm.haplos.freqs.Rd
62576fe7d3bca77793f521888f072832 *man/rbm.haplos.power.Rd
e7245a878185af856370a484e5485ecd *man/rbm.haplos.thresholds.Rd
e538f43aa17cb9ec66d741e98935ba4e *man/set.CADDregions.Rd
0c58a96bd0ab08e2925cabd94786eaa9 *man/set.genomic.region.Rd
5b84a800a70aad61c850e0db6f4fec30 *man/set.genomic.region.subregion.Rd
bd37b7981f26bfbc499d69362af9f0c0 *man/subregions.LCT.Rd
5e4c40bc12afdf043205dfb3dab137c4 *src/GPG.cpp
f846ad59efafd269177798f6a252a67d *src/GPG.h
2bc6951a4c63eab9224bde7571c0d5de *src/GPG2.cpp
435a457703fdd800b7809987954162d6 *src/Makevars
55b199b1036d8b84d504a507305363a7 *src/Makevars.win
866cabc91895020cdd6ef7e382a0320e *src/allelecounter.cpp
fa91d4aebf30b27a7adc7cecaf4a89b7 *src/allelecounter.h
d630639a623d4b5395b5c9c607bb8a20 *src/allelecounter2.cpp
875acda540146ad327fde3349686cadb *src/allelecounter2.h
85a8f0d653dc078401e69aa362b33152 *src/alleles_by_group.cpp
de71d24837c1840b71331e674000d5cf *src/block_diag.cpp
fb5da6185035214101f01503dbea151f *src/burden.cpp
9416560ce670cf0d82c488b2c9446166 *src/colsums.cpp
2d29f9981e98873b70d3f598cc17b56b *src/count_alternative_alleles.cpp
0002b170814ccd09c59136e30b401863 *src/itere_combinaisons.cpp
7ba1b078f78aba636e943712633e366d *src/itere_combinaisons.h
00631598beb89b3b79f73ced5813b01f *src/jaccard.cpp
9d3211bf481847409a9cebe26ecbd773 *src/label_genes.cpp
470d5f7b18fdc415a300ab874d8096da *src/label_multiple_genes.cpp
33221db4906b3e1e0adbebfac189dc09 *src/m4_stats.cpp
e3ab65750807a3131faee07560e7b47e *src/matrix4.cpp
f7a6c5393fe0d739a72e2932ae5f99ec *src/moments.cpp
d6cb5b42930089eade1d07e54d075155 *src/polytomic_haplotype_proba.h
a6fb36654d733f0eef09183395eb45c6 *src/random_bed_matrix.cpp
c5ac56f260c645b39c4a0b57afe542ec *src/ravages_init.c
b4748b063afe4c4de3779b7fa355e1c9 *src/rbm_haplos_freqs.cpp
481e7db3961eced6e49127ecc9b2278d *src/rbm_haplos_thresholds.cpp
1fb28747b6c571993e23ac97ad79ce1d *src/rbm_haplos_thresholds_filling.cpp
f6729ce16cf5df0d63ee3814752cdcd8 *src/skat.cpp
7ee3a3ccb84cb826a5fb53c1c84ce309 *src/skatBootstrap.cpp
387e6cb5edc219cee1152843d61c0400 *src/skatMoments.cpp
5841f3f3c142e67890b9fb682522318f *src/skatStats.cpp
3eae8abd1577c79e5f5df735079704a9 *src/statistics_class.h
68b1536cb2a74246126c0d72e8821f40 *src/sum_by_group.cpp
74105b5d380486b52ab8c3cf35ab9e0f *src/sum_fst.cpp
5a0fbcba6dc721f1326b4d8463747e97 *src/sum_fst1.cpp
5fe3eb60b8b0473a220481922f95e6eb *src/weightedGenotypes.cpp
eae579c3476a10a25ea9e0bd30b69f82 *src/weightedGenotypes.h
d69038be66a8f6dec8e5ca6b0132ed2c *src/weighted_left_product.cpp
0f7af645d409035cee6cbb404e0b804a *src/weighted_left_product.h
eda5fcea1e160e71b82a200f65f3d283 *src/weighted_left_product2.cpp
4d1eb6ff5f398458fe43df2cd53602fc *vignettes/Ravages_Simulations_vignette.Rmd
eb334b93ea485c7b553f8651464941fa *vignettes/Ravages_vignette.Rmd
