84aebf3762c74fb39713acf26a0ec5c8 *DESCRIPTION
0eeca02d128f8c55e8eded862ae7d168 *NAMESPACE
118fecdd442eaa6d5a0a98805384280d *R/AAmass.R
898564612aa8b31966717cdb9cd830dc *R/AucRoc.R
072675e7e745acfa48cb80b7a8f91928 *R/VolcanoPlotW2.R
2d76e911e56899b442f5f78419775c3e *R/cleanListCoNames.R
cbf71009fa00fb95a101e59bde8d7806 *R/combineMultFilterNAimput.R
02b4be7bf287e9b94811fa69c9dce52f *R/convAASeq2mass.R
b98d088cdee197d53800d52e3aec176b *R/corColumnOrder.R
d35d0e5447245f630d99b323906592bc *R/countNoOfCommonPeptides.R
54156ff9888f5ab6821de751f25afe25 *R/exportSdrfDraft.R
6f7bca48505a87ebb636723c84f5e32c *R/extrSpeciesAnnot.R
fe6e3ee5d2d69592403b5cb54f889f2e *R/extractTestingResults.R
09ececfb51c961ce9f5ab17e8c5893f1 *R/foldChangeArrow2.R
32fae010852bc206b13dca4c7175b041 *R/fuseProteomicsProjects.R
6ffae3c53b5571d740caaca41f674564 *R/getUPS1acc.R
7ccd8f69e611ec958783a02e9884e224 *R/isolNAneighb.R
43ae4cd8b72bc046520f801cc27b686f *R/massDeFormula.R
0daa430407f4b9864c5399b765fe5d2b *R/matrixNAinspect.R
e22e857f590e45db30353e404f1872d2 *R/matrixNAneighbourImpute.R
6065ee13b5d15f379c4cac8c865964ca *R/plotROC.R
ac0a348fc261b369252d02c653d5747f *R/razorNoFilter.R
8b10872023aad2860453834c17149709 *R/readAlphaPeptFile.R
46fc5393ad8c3ffa4746854ef89bae2d *R/readDiaNNFile.R
a5e91b1cbfcf0350f3370c9f9d255f40 *R/readDiaNNPeptides.R
c7bea229bb59f67ac2b81869b687b87b *R/readFasta2.R
e0cd2b732444f194b4a912c61a34c456 *R/readFragpipeFile.R
2fe70c92eaebf363c28f59db79f4052e *R/readIonbotPeptides.R
74ad665571c00afd36ae8bbbc9a4e73f *R/readMassChroQFile.R
962534b7eb547342a98517de9dc2d12d *R/readMaxQuantFile.R
4116a823ba53f17bdff58310417fc1d4 *R/readMaxQuantPeptides.R
635bdfa734144402cea6ebfe91a18e26 *R/readOpenMSFile.R
a85261980fccfa9eb58127063d969f5f *R/readProlineFile.R
b354cb71a6ff96096e5e4c2dc96924c0 *R/readProtDiscovFile.R
da76597e1f41ae7a5368a2e30b1d6172 *R/readProtDiscovPeptides.R
2bbf8c7b84dd51c6cc859097557a5907 *R/readProteomeDiscovererFile.R
d80a182f6a48d545fc02980a9056f0ce *R/readProteomeDiscovererPeptides.R
c862a023314712aeabeb9177fcee7ec6 *R/readSampleMetaData.R
6b66d4185f6f2ad339876a0e2e54483b *R/readSdrf.R
a2cdb0309559df963393e43a7cf21fa6 *R/readUCSCtable.R
d8be2fbb094accd7ba4c932dc47a506c *R/readUniProtExport.R
38270b5c340a404fe84a78a03c79d481 *R/readWombatNormFile.R
6959bd3614416e3b5076e79638378ece *R/removeSampleInList.R
f8570ef46179192256acf12e62087cd5 *R/replMissingProtNames.R
1e55200d291836b9acb3445b53141a7b *R/shortSoftwName.R
2b0db974745106b29846b51fc93763ac *R/summarizeForROC.R
21d2f327b62b8a40397d7765e38dbc05 *R/test2grp.R
7f65f5a2c75f05f23eac2e0d14244d7e *R/testRobustToNAimputation.R
192437e73f28d0aa535e00a0befbc53e *R/writeFasta2.R
6c11ff440138de52d9f55f40f5fb60e9 *build/vignette.rds
b66f07dcef10d893af6d5138bb0c1cbd *inst/doc/wrProteoVignette1.R
53f037e7d81cf2c06f8f6b2662dc29b3 *inst/doc/wrProteoVignette1.Rmd
70e2ad3bd821f328ada8419ac5a3947d *inst/doc/wrProteoVignette1.html
6384d56ea938c78298a6330db0cd2b5a *inst/doc/wrProteoVignetteUPS1.R
dd43c8c6763f9b05e5392329402d787a *inst/doc/wrProteoVignetteUPS1.Rmd
378896fba48d7947c50aab3ae1d389aa *inst/doc/wrProteoVignetteUPS1.html
5a36dae79d2427c12f424b7b63273b63 *inst/extdata/OpenMS_tiny.csv.gz
fa4ddbca3647427a25de3ca91325b01d *inst/extdata/UCSC_hg38_chr11extr.gtf.gz
972ead93de7417ee0e26aa687f5027e2 *inst/extdata/conta1.fasta.gz
ecce9c03a56859d9d2e35f6a8c7ac3c7 *inst/extdata/deUniProt_hg38chr11extr.tab
fd088c93fc9d4ce11d75cdccb3e51fcf *inst/extdata/exampleProlineABC.csv.gz
ef3a127cb7bd36499883856839d3b989 *inst/extdata/exampleProtDiscov1.txt.gz
3339337d25ff8813704da6921997476e *inst/extdata/parameters.txt.gz
c3cbb00e063cbb974e7f197a076c512d *inst/extdata/peptides_tinyMQ.txt.gz
903b0a68307c4e9541c89ecd39941cfe *inst/extdata/proteinGroups.txt.gz
359b295c744d24f3af38275d661c6e59 *inst/extdata/proteinGroupsMaxQuant1.txt.gz
393f403f2829db9fe4ff28794a423633 *inst/extdata/pxd001819_PD24_Proteins.txt.gz
a91db83677978169a0576c7a4ca3e749 *inst/extdata/pxd001819_PD_InputFiles.txt.gz
cfc7e9ff9779723c2871262ce1ebac39 *inst/extdata/pxd001819_PL.xlsx
5244b011e37cd5fc0a53ec480d01c3b8 *inst/extdata/summary.txt.gz
93859d51bffe2efb895868be9dbf44f2 *inst/extdata/tinyAlpaPeptide.csv.gz
a858b4ba772436fc08a9e7fcd22cb051 *inst/extdata/tinyDiaNN1.tsv.gz
16d4e227fb74166e15d9ef132aaf9daa *inst/extdata/tinyFragpipe1.tsv.gz
0c1fe9bb56555312715f0a8928458974 *inst/extdata/tinyIonbotFile1.tsv.gz
bf47bf530aa4861f0cc3aa05c7420091 *inst/extdata/tinyMC.RData
4ce3b64b9a16c21aebb640440016c6d3 *inst/extdata/tinyPD_allProteins.txt.gz
81843f6d0972828d6e4ee28b02357c8f *inst/extdata/tinyWombCompo1.csv.gz
d304e0b6672110cb2d1ea1de5752908d *man/AAmass.Rd
d7babe939a57c9c86fa155812381e969 *man/AucROC.Rd
7f7a04a4bcace1c3c5685a0eea27e282 *man/VolcanoPlotW2.Rd
308a97c8289e6316fd3d69d18a23dcce *man/cleanListCoNames.Rd
e6e9868546ae5201949565707336fa24 *man/combineMultFilterNAimput.Rd
3a3ada0e10c0a28266820259d271152b *man/convAASeq2mass.Rd
5c40fbbed41e2cd3dbd31d68548a8ea9 *man/corColumnOrder.Rd
a19446e79e02b27474147524a82fe4fe *man/countNoOfCommonPeptides.Rd
7aa8f38724d98c790cd7e13de57b936f *man/dot-atomicMasses.Rd
e84440c1cd38d837a13c2e80082d5cf2 *man/dot-checkKnitrProt.Rd
8697ac96e8ad654d792fbb14bfa9bdc3 *man/dot-checkSetupGroups.Rd
2dcfc1b42cdd4a7520d710c702ef99e1 *man/dot-commonSpecies.Rd
f835cfae1b483fa259cdc38710c2085b *man/dot-extrSpecPref.Rd
d0b8063f9e3e97168a49863d8c7d790d *man/dot-imputeNA.Rd
dfbe49c7298bb0874a99040d458424e8 *man/dot-plotQuantDistr.Rd
79cc1ca0e66ba08ffc4f2949b15e9d41 *man/exportSdrfDraft.Rd
d882966f436b7a20e61c8bd917aa75cb *man/extrSpeciesAnnot.Rd
a7977a21210652f4a697f93d818652c0 *man/extractTestingResults.Rd
8b0d38bcb385e03d56038f7ccc3b98e4 *man/foldChangeArrow2.Rd
09ec59606065a2afe238cbc12ce4f5c9 *man/fuseProteomicsProjects.Rd
0d5a7989212ac99b1629c8ae73b0d5ad *man/getUPS1acc.Rd
115f92c8b0c2ef3c3cc1d24289542ee4 *man/isolNAneighb.Rd
1409eac1ed4166a707be5a308442fa1d *man/massDeFormula.Rd
f44c40700f284e7609d952fcd0690f64 *man/matrixNAinspect.Rd
bc4179f553fb7331efccd17e852f3812 *man/matrixNAneighbourImpute.Rd
1a12d17f8d611df731256e020b853c3f *man/plotROC.Rd
d01daf4c32f167ee6e81da8f900613dd *man/razorNoFilter.Rd
cd5a516e2f857ba699badf439d6d1e2d *man/readAlphaPeptFile.Rd
086e06bae17840c87434f8afec7ce70d *man/readDiaNNFile.Rd
a649c6033181a6971082bea1acdf6038 *man/readDiaNNPeptides.Rd
60dc80bd06ddf15737728dd3d0f76f27 *man/readFasta2.Rd
0f6ffabf3b1060e4e6adcf29c7836829 *man/readFragpipeFile.Rd
604c2a5a39d9b79cdd322d4b47eeaae5 *man/readIonbotPeptides.Rd
c76abc7cd55b83e3cef0a2e7eb9a6894 *man/readMassChroQFile.Rd
8f8cf51d8178d483b33a47c937fde5b6 *man/readMaxQuantFile.Rd
17a5ff1d1ac17ad68b33dbb7a762d749 *man/readMaxQuantPeptides.Rd
bd7a4ac97771ae4f529cf1c218fb04ea *man/readOpenMSFile.Rd
1c2db6a2241ce591a26d16968ae61d62 *man/readProlineFile.Rd
ff424b78ce31b595cafa1ba6d4355722 *man/readProtDiscovFile.Rd
9ce3336a7b1de9124a6ad6ef745721c7 *man/readProtDiscovPeptides.Rd
94adbd8a109522cbf0677c678886f1e5 *man/readProtDiscovererPeptides.Rd
2704cdbe17fbda29b160d522fb702de0 *man/readProteomeDiscovererFile.Rd
78b9ea5f28ba553a82e6f4111698c230 *man/readProteomeDiscovererPeptides.Rd
65589e639213d21550f966ed12b977f5 *man/readSampleMetaData.Rd
ed637eb7008a73f42535dbbdc23613b4 *man/readSdrf.Rd
df9fe52496078623bfe20a8dd14daf4c *man/readUCSCtable.Rd
6f7a99e54c739048470cc9a0bcd3ece2 *man/readUniProtExport.Rd
ba5e6d699f4615e7ae6456fc21b5f278 *man/readWombatNormFile.Rd
b2041681a60bb4ea79dab212269ef367 *man/removeSampleInList.Rd
f28528858a408af0cd7a2770da5a89a4 *man/replMissingProtNames.Rd
1d7135a8d7e3cef909916b7867fdacd3 *man/shortSoftwName.Rd
f720842e8086b70c6374b4b593666381 *man/summarizeForROC.Rd
ba009c8308b27e0c88c34c2c18f99009 *man/test2grp.Rd
d0a8eaabc1611ad04e16f2b487c460b0 *man/testRobustToNAimputation.Rd
8d61ba091677cb19e1c54c298f997f91 *man/writeFasta2.Rd
53f037e7d81cf2c06f8f6b2662dc29b3 *vignettes/wrProteoVignette1.Rmd
dd43c8c6763f9b05e5392329402d787a *vignettes/wrProteoVignetteUPS1.Rmd
