000e34129029edaff9ab5e6345fcc970 *DESCRIPTION
6588f61197077d2c7b3e14cecaf6fe17 *NAMESPACE
118fecdd442eaa6d5a0a98805384280d *R/AAmass.R
898564612aa8b31966717cdb9cd830dc *R/AucRoc.R
072675e7e745acfa48cb80b7a8f91928 *R/VolcanoPlotW2.R
2d76e911e56899b442f5f78419775c3e *R/cleanListCoNames.R
cbf71009fa00fb95a101e59bde8d7806 *R/combineMultFilterNAimput.R
02b4be7bf287e9b94811fa69c9dce52f *R/convAASeq2mass.R
ac46c9bc4c156346d9cebb47eb9c5b7e *R/corColumnOrder.R
d35d0e5447245f630d99b323906592bc *R/countNoOfCommonPeptides.R
54156ff9888f5ab6821de751f25afe25 *R/exportSdrfDraft.R
6f7bca48505a87ebb636723c84f5e32c *R/extrSpeciesAnnot.R
0f85535dcc8b2a2476c62f990d5a7e59 *R/extractTestingResults.R
09ececfb51c961ce9f5ab17e8c5893f1 *R/foldChangeArrow2.R
7c5d6a1c911f17a97bbaed6599c26311 *R/getUPS1acc.R
7ccd8f69e611ec958783a02e9884e224 *R/isolNAneighb.R
43ae4cd8b72bc046520f801cc27b686f *R/massDeFormula.R
0daa430407f4b9864c5399b765fe5d2b *R/matrixNAinspect.R
ab720218daf46797e037d110e7576085 *R/matrixNAneighbourImpute.R
6065ee13b5d15f379c4cac8c865964ca *R/plotROC.R
ac0a348fc261b369252d02c653d5747f *R/razorNoFilter.R
d1a20f577743716eefccd3c7bbde4413 *R/readDiaNNFile.R
f26d226da7603382aea49d856444ca73 *R/readDiaNNPeptides.R
c96101a7f4fe3e4a52428bc2a6487d2b *R/readFasta2.R
296c294871abc6f84eb11205d021971e *R/readFragpipeFile.R
2533c380fd2c2d5a4f42547d682ce7a3 *R/readMassChroQFile.R
92a5e13615b37a099b9750af796dbbe6 *R/readMaxQuantFile.R
d54a14e8d5559286203c8d3cad734069 *R/readMaxQuantPeptides.R
b82cc283cd6ac14cdd61a986501aa70b *R/readOpenMSFile.R
72b6ae68555f06b6e813a79af702836a *R/readProlineFile.R
7a041b37d423241fb824c2408c48829d *R/readProtDiscovFile.R
5869d8decc2f8da72a3118e99617e460 *R/readProtDiscovPeptides.R
bdc8b0a1cc68151f2d129a4b7426c66e *R/readProtDiscovererPeptides.R
bfe0d4e910d692cc621feaf11154ace0 *R/readProteomeDiscovererFile.R
b73ab528fdf0215378104fd83011f48c *R/readSampleMetaData.R
0fa8ffdee6444b63e453ffffcf572df6 *R/readSdrf.R
7149a6c0f620e634da0e03f1fb33726c *R/readUCSCtable.R
516778a934662a71be123e02fc089070 *R/readUniProtExport.R
ae797e98ba67d6278c135d2d744cdd48 *R/readWombatNormFile.R
6959bd3614416e3b5076e79638378ece *R/removeSampleInList.R
f8570ef46179192256acf12e62087cd5 *R/replMissingProtNames.R
41470ecbd745061213a89d17679a2f8d *R/shortSoftwName.R
2b0db974745106b29846b51fc93763ac *R/summarizeForROC.R
21d2f327b62b8a40397d7765e38dbc05 *R/test2grp.R
7f65f5a2c75f05f23eac2e0d14244d7e *R/testRobustToNAimputation.R
192437e73f28d0aa535e00a0befbc53e *R/writeFasta2.R
2836b2c5db38c9819380bd093383d89d *build/partial.rdb
43dd5b13092b24eb5453d8e014caf8de *build/vignette.rds
6d6056614269c36897d0f70cb6077f03 *inst/doc/wrProteoVignette1.R
126cc8c90f1653c96ead5f75c6ee9fcf *inst/doc/wrProteoVignette1.Rmd
22e8941a85444cf4375ba9aa3477bfb9 *inst/doc/wrProteoVignette1.html
3555e9d23951470d7027830a0b3d124c *inst/doc/wrProteoVignetteUPS1.R
1d4fdea204db8ee6c37c359bba26b686 *inst/doc/wrProteoVignetteUPS1.Rmd
16d80dbe2eb5963bd27958f768bc2256 *inst/doc/wrProteoVignetteUPS1.html
5a36dae79d2427c12f424b7b63273b63 *inst/extdata/OpenMS_tiny.csv.gz
fa4ddbca3647427a25de3ca91325b01d *inst/extdata/UCSC_hg38_chr11extr.gtf.gz
972ead93de7417ee0e26aa687f5027e2 *inst/extdata/conta1.fasta.gz
ecce9c03a56859d9d2e35f6a8c7ac3c7 *inst/extdata/deUniProt_hg38chr11extr.tab
fd088c93fc9d4ce11d75cdccb3e51fcf *inst/extdata/exampleProlineABC.csv.gz
ef3a127cb7bd36499883856839d3b989 *inst/extdata/exampleProtDiscov1.txt.gz
3339337d25ff8813704da6921997476e *inst/extdata/parameters.txt.gz
c3cbb00e063cbb974e7f197a076c512d *inst/extdata/peptides_tinyMQ.txt.gz
903b0a68307c4e9541c89ecd39941cfe *inst/extdata/proteinGroups.txt.gz
359b295c744d24f3af38275d661c6e59 *inst/extdata/proteinGroupsMaxQuant1.txt.gz
393f403f2829db9fe4ff28794a423633 *inst/extdata/pxd001819_PD24_Proteins.txt.gz
a91db83677978169a0576c7a4ca3e749 *inst/extdata/pxd001819_PD_InputFiles.txt.gz
cfc7e9ff9779723c2871262ce1ebac39 *inst/extdata/pxd001819_PL.xlsx
5244b011e37cd5fc0a53ec480d01c3b8 *inst/extdata/summary.txt.gz
a858b4ba772436fc08a9e7fcd22cb051 *inst/extdata/tinyDiaNN1.tsv.gz
16d4e227fb74166e15d9ef132aaf9daa *inst/extdata/tinyFragpipe1.tsv.gz
bf47bf530aa4861f0cc3aa05c7420091 *inst/extdata/tinyMC.RData
4ce3b64b9a16c21aebb640440016c6d3 *inst/extdata/tinyPD_allProteins.txt.gz
81843f6d0972828d6e4ee28b02357c8f *inst/extdata/tinyWombCompo1.csv.gz
d304e0b6672110cb2d1ea1de5752908d *man/AAmass.Rd
d7babe939a57c9c86fa155812381e969 *man/AucROC.Rd
7f7a04a4bcace1c3c5685a0eea27e282 *man/VolcanoPlotW2.Rd
308a97c8289e6316fd3d69d18a23dcce *man/cleanListCoNames.Rd
e6e9868546ae5201949565707336fa24 *man/combineMultFilterNAimput.Rd
3a3ada0e10c0a28266820259d271152b *man/convAASeq2mass.Rd
4510738347d65d5e482acdfd77a9d9d8 *man/corColumnOrder.Rd
a19446e79e02b27474147524a82fe4fe *man/countNoOfCommonPeptides.Rd
7aa8f38724d98c790cd7e13de57b936f *man/dot-atomicMasses.Rd
e84440c1cd38d837a13c2e80082d5cf2 *man/dot-checkKnitrProt.Rd
8697ac96e8ad654d792fbb14bfa9bdc3 *man/dot-checkSetupGroups.Rd
2dcfc1b42cdd4a7520d710c702ef99e1 *man/dot-commonSpecies.Rd
f835cfae1b483fa259cdc38710c2085b *man/dot-extrSpecPref.Rd
d0b8063f9e3e97168a49863d8c7d790d *man/dot-imputeNA.Rd
35f1b8794faec744a4863cebde6726ae *man/dot-plotQuantDistr.Rd
79cc1ca0e66ba08ffc4f2949b15e9d41 *man/exportSdrfDraft.Rd
d882966f436b7a20e61c8bd917aa75cb *man/extrSpeciesAnnot.Rd
575d550c0f6df9983ff46c6e12f39a1f *man/extractTestingResults.Rd
8b0d38bcb385e03d56038f7ccc3b98e4 *man/foldChangeArrow2.Rd
4bfb42b0535b24fa0a330933243b2ed0 *man/getUPS1acc.Rd
115f92c8b0c2ef3c3cc1d24289542ee4 *man/isolNAneighb.Rd
1409eac1ed4166a707be5a308442fa1d *man/massDeFormula.Rd
f44c40700f284e7609d952fcd0690f64 *man/matrixNAinspect.Rd
bc4179f553fb7331efccd17e852f3812 *man/matrixNAneighbourImpute.Rd
1a12d17f8d611df731256e020b853c3f *man/plotROC.Rd
d01daf4c32f167ee6e81da8f900613dd *man/razorNoFilter.Rd
9e6a442f6a5f5fc55b3087f3e6e7c1ec *man/readDiaNNFile.Rd
610049ff3d91f276270b39211eb17881 *man/readDiaNNPeptides.Rd
b51e22b4c9b1dc0509c25234337de2a7 *man/readFasta2.Rd
83c6c3b46fe4605f3616f088e2759431 *man/readFragpipeFile.Rd
6d169add07052ffa5f3c9f5f213ed0e2 *man/readMassChroQFile.Rd
b1dc47d09d1817790b0d6bd6c28bc205 *man/readMaxQuantFile.Rd
c7412531fd50080f6d8e4fa091ca4e89 *man/readMaxQuantPeptides.Rd
bd7a4ac97771ae4f529cf1c218fb04ea *man/readOpenMSFile.Rd
cfaeaf7f4a375ef1b9d6a5feb594b3e0 *man/readProlineFile.Rd
d3d467ae64def3c1240385b62e7efc9c *man/readProtDiscovFile.Rd
2793949ca0af6fcaae61a3fa0c3e16c7 *man/readProtDiscovPeptides.Rd
1c03e565b61cca002712f2f6c0117150 *man/readProtDiscovererPeptides.Rd
f9a64c8784465c09fd51fc046294ea66 *man/readProteomeDiscovererFile.Rd
1b60949497c1914010951040d3a86718 *man/readSampleMetaData.Rd
b33d595b5d854c10b3721b247dcf3d01 *man/readSdrf.Rd
efb3435b5c77bc53b2ffd586a3dc1b08 *man/readUCSCtable.Rd
5ea0a4f1e7525318e160462db2027dc4 *man/readUniProtExport.Rd
c5f9619434ab1fc4a9fcd00e812b9806 *man/readWombatNormFile.Rd
b2041681a60bb4ea79dab212269ef367 *man/removeSampleInList.Rd
f28528858a408af0cd7a2770da5a89a4 *man/replMissingProtNames.Rd
1d7135a8d7e3cef909916b7867fdacd3 *man/shortSoftwName.Rd
f720842e8086b70c6374b4b593666381 *man/summarizeForROC.Rd
ba009c8308b27e0c88c34c2c18f99009 *man/test2grp.Rd
d0a8eaabc1611ad04e16f2b487c460b0 *man/testRobustToNAimputation.Rd
8d61ba091677cb19e1c54c298f997f91 *man/writeFasta2.Rd
126cc8c90f1653c96ead5f75c6ee9fcf *vignettes/wrProteoVignette1.Rmd
1d4fdea204db8ee6c37c359bba26b686 *vignettes/wrProteoVignetteUPS1.Rmd
