ef7333ebdaa715e679adc12587e28937 *DESCRIPTION
aeb3d3525f92d4b2ae0659a9d9cb593b *LICENSE
541c64335137420d2903a2f16eb558e9 *NAMESPACE
513bf4b0b310a10f56a1b48c7789f759 *R/RcppExports.R
4d37f548893c52bcb32eaaa096e830ef *R/data.R
5d53b69b4abe1eff03d5ac9917a733a0 *R/findGroves.R
b5cb61e857fe552beb7d6f1a21deff0c *R/medTree.R
823026da119c4ed3ce1e8caa6b2b09ea *R/metrics.R
76eb5cba87cc53f5570e3b60ea2cc020 *R/plotGroves.R
a83358b9ee1ffcdabd283f795c6b1b3d *R/plotTreeDiff.R
3d267930cddbb549e8de7cb9974078aa *R/servers.R
626965bc80ff03b1e486ca1744099951 *R/transmissionTrees.R
1115fb1e34a51ee8b9621fd2087db961 *R/treespace.R
86cae96a8f553e867ea818a188f55ba6 *README.md
ed976b9060b5591cfe9963568bb28b41 *build/vignette.rds
bcff1609e140336bd432e12db7117aff *data/DengueBEASTMCC.RData
6583dbfac178bfb8917064bbf7223322 *data/DengueSeqs.RData
299b7355fff5403a772233c164e15c25 *data/DengueTrees.RData
a2159a501647d1d620de2a90d1e29c32 *data/fluTrees.RData
4b283219478dd962374a26476d5206fd *data/woodmiceTrees.RData
0894c52a5f25667c0231a2c5f04cb4d0 *inst/doc/DengueVignette.R
f17db7f7894a6fe2291d571348d95ca2 *inst/doc/DengueVignette.Rmd
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daac10ad341f9ee6b38de5f36c052703 *inst/doc/TransmissionTreesVignette.html
1a2b6938a72c643ad9fc2d748f7b01f8 *inst/doc/introduction.R
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2fae9281359e14a0701b3b6a2a071a98 *inst/shiny/ui.R
6c4711607de1791415c5b50511e84ad3 *inst/shiny/www/bootstrap.simplex.css
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095129a1994251eec286d5bc3f3fce98 *man/DengueBEASTMCC.Rd
91697d211ad4230586806881efb444da *man/DengueSeqs.Rd
1fb6214a402808562b962f6ff0ab9db2 *man/DengueTrees.Rd
44b9c8391dda972b5298c0b98fd4dccd *man/findGroves.Rd
fa2b5fef986c8fb22939a42513bb7f43 *man/findMRCIs.Rd
5368ab087178daccfda6080c2cc7a4f6 *man/fluTrees.Rd
cb81f4960674bf2be0843a85e03e820b *man/linearMrca.Rd
6eb5452f9df5aa4fa165a2a53c60f16e *man/medTree.Rd
3c7119f193b39f8ebfd8ce259d61248d *man/multiDist.Rd
2b399278b9c70facffb2cd97efae23bd *man/plotGroves.Rd
88f5d0ed2e6e13777e930bcc69fca3ff *man/plotGrovesD3.Rd
977107022b64fefb1ebc225d31eafed2 *man/plotTreeDiff.Rd
f1ff6be3e9debb74626d75ac60aa2e33 *man/refTreeDist.Rd
2fe8856726efa7bb0ff40aaf0575426c *man/tipDiff.Rd
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033c781e86085e130696b3df0b1c1e3d *man/treeVec.Rd
fe55c4c9f9cbb71f8ae667fead802a51 *man/treespace.Rd
ec2bc877c94fef4eb173e9a61cd1eb09 *man/treespaceServer.Rd
a77475898bc5833024c09c0dc37869db *man/wiwMedTree.Rd
81d99a24989b6bd9bc217ca56b1e1bb1 *man/wiwTreeDist.Rd
ee53473c06ed9d4d1bba201c55995879 *man/woodmiceTrees.Rd
9c74c81eeaf5d8af22cd33dab4daffcc *src/CPP_update_combinations.cpp
1976b5f5098a4e7cda28aab94ac9ff0c *src/RcppExports.cpp
3cd3f6abd34189affceb7002359fd292 *src/treespace_init.c
d3250417a44742de696377e9f7f9cb46 *tests/testthat.R
c98ad82c3fede784144d1a89de4054cf *tests/testthat/testbasics.R
f17db7f7894a6fe2291d571348d95ca2 *vignettes/DengueVignette.Rmd
279ba230b144991db76aef5d67cd34e2 *vignettes/TransmissionTreesVignette.Rmd
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dfdf468cc194071645e497d92287a2da *vignettes/introduction.Rmd
