eb7619c8084464d7299988e1f3502717 *DESCRIPTION
f8b4eab782e186967dc2ca9e015333d3 *NAMESPACE
1707f5660609e8ce46fd509a212dba76 *R/RcppExports.R
432129a07bb3dee2f1e0fab7945d74d4 *R/data.R
fd5f21678765fa6137039093b8a6159f *R/findGroves.R
17975aae8a9d7cee5bf244e1f0b4dbca *R/medTree.R
2a853e0e543cc878b8e4cdc13fa0faaa *R/metrics.R
853ce55aaf285865c150886e3039c005 *R/plotGroves.R
44a5a5bd19b82dca8584fd2337db3264 *R/plotTreeDiff.R
0df595afba7c2ccd0147b637f24d1398 *R/servers.R
978d9825154ede2b3a1625a25927df3a *R/treescape.R
f6465d90730600a43ac685a97a46f28e *README.md
f1170c82691a71beb82fd1be735da01e *build/vignette.rds
2f82967b31cf0355fca77cf057da0b00 *data/DengueBEASTMCC.RData
1afe5da1601d5ae111806c08e57fec0c *data/DengueSeqs.RData
f128fb06ac44efd32fb04ecc06896bd2 *data/DengueTrees.RData
e49f82b9d2e4e04959fc1609e3242de7 *data/fluTrees.RData
48df74b1807cc03a99ea9f4d16e0a8e9 *data/woodmiceTrees.RData
f21e17c3f50b237b5ce2556dbdcf121c *inst/doc/DengueVignette.R
b3aa4ade6d495cf619a43bd40bc801c8 *inst/doc/DengueVignette.Rmd
014b6abe6d47607f6de8b8b0581aa79a *inst/doc/DengueVignette.html
0a8d8aa3a8ad51861f25234266e748b7 *inst/doc/treescape.R
c1e53a05ece3dbd2a77344fcaf167e2a *inst/doc/treescape.Rmd
a25ddda03df34c2e492bee9a8d9d2d23 *inst/doc/treescape.html
15909e4847da2bad2244d568cb8bb52f *inst/shiny/server.R
fb525292005b06a76288661677da5262 *inst/shiny/ui.R
72a52ccb88878f4fbc01b01c956377d3 *inst/shiny/www/bootstrap.simplex.css
6209b93fd0d79a50e31f3e727b5e4e46 *inst/shiny/www/html/help.html
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10c78105a7ca827999c25885a737b878 *inst/shiny/www/img/logo.png
4c310bde08e114bcc81546201149f9d2 *inst/shiny/www/styles.css
ff8094b51ea7fc3e786c4271c66af83d *man/DengueBEASTMCC.Rd
a0e8cf546e2a86f7646f397ed7b110d4 *man/DengueSeqs.Rd
a69ee17f64e72b17fd4bdf396b018266 *man/DengueTrees.Rd
eba506be4bf2ea7f6d81728a1300bd26 *man/findGroves.Rd
954752421d63504a7697bfe389a55b79 *man/fluTrees.Rd
5f8d90d6d647f72f071fd58aea739068 *man/linearMrca.Rd
aa3b403c4c2dc0d2ad8c263fff53ac3c *man/medTree.Rd
e6bb1cf7a0c4a191b0922b004912a0de *man/multiDist.Rd
736ee7b68dc3b8b8740a6399736accd7 *man/plotGroves.Rd
8fc8c46369a05dd1f14aee6f8d6facf7 *man/plotGrovesD3.Rd
9b83dcbb9895d0f298cfeb4bc9701920 *man/plotTreeDiff.Rd
2cf4883b19e75fe6dbd2dfbe856dd256 *man/refTreeDist.Rd
1e6b59b7331a7ebb0fd118bf9a76250d *man/tipDiff.Rd
6b629fc2baca04b9b34fe142d8a35ee2 *man/treeDist.Rd
56aae6c5bf96ea75e82add8f64c22a27 *man/treeVec.Rd
8a7f087f214fb3afe3c2f011f21b510c *man/treescape.Rd
573082f274bb8b87b340eff4721c1589 *man/treescapeServer.Rd
ade0ea8544defcd9653327459b7d73b0 *man/woodmiceTrees.Rd
9c74c81eeaf5d8af22cd33dab4daffcc *src/CPP_update_combinations.cpp
34267317e05e7c08082fff831a20b0d9 *src/RcppExports.cpp
0b23b4bc5856e5e392f37fbdeee6fd16 *tests/testthat.R
7556a5ff5872e8618d5a686d8231345a *tests/testthat/testbasics.R
b3aa4ade6d495cf619a43bd40bc801c8 *vignettes/DengueVignette.Rmd
812c64cad9dd21830e513593a563a13e *vignettes/figs/BEASTtree_diffs-1.png
f0114a4e63755de6d252c4e9d9eae5ba *vignettes/figs/BEASTtree_diffs-2.png
53b33d52ef72acfb39e3a14342c8eac9 *vignettes/figs/compare_BEAST_to_other_trees-1.png
245ab263b6c175cbf74905b187dcf8e8 *vignettes/figs/compare_BEAST_to_other_trees-2.png
3254f0fef3d1170ecf2c1e6ecf1dba40 *vignettes/figs/compare_BEAST_to_other_trees-3.png
b62ff1e3036f811db83a125ceafeb757 *vignettes/figs/compare_trees_NJ_v_ML-1.png
a674c967f24e2d75e9636f511bf6e04e *vignettes/figs/distances-1.png
d2765ad3784553d03d5b726778a15045 *vignettes/figs/distances-2.png
9d751543c51335a0aff2a82d32647370 *vignettes/figs/distances_readme-1.png
88b11b6f51e21345be1fd8bafa31a279 *vignettes/figs/distances_readme-2.png
56a8de03d01520574f7f6deb83dc09a8 *vignettes/figs/findgroves-with-emphasis_readme-1.png
904a31ee2ac3490c5fce5444a35910d4 *vignettes/figs/make_NJ-1.png
f55c2b82f4ef62c732bbd9dc5ee6e43e *vignettes/figs/plotgroves-1.png
4831761d443daec1832115749111b650 *vignettes/figs/plotgroves2_readme-1.png
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a53902c75200510cf36550d5fb6548c4 *vignettes/figs/plotgroves2_readme-3.png
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4f7a7b148deee0ea054b5aa6c48e1b0f *vignettes/figs/scree_plot-1.png
c5cf1292c070d8020601d7bc67369866 *vignettes/figs/see_ML_boots-1.png
c5ea5bbe49a79f30d97483cd50d5b6ee *vignettes/figs/see_NJ_boots-1.png
dece84f823670ff0e7257cc643bf068b *vignettes/figs/treescape3d.png
3957a3c2207cd065f1d95cc704ebaa7d *vignettes/figs/treescapeDensiTree.png
32257dc64bf2670d28770a4679f063a7 *vignettes/figs/treescapeTree.png
321eb22c13d23807234aa3a3e21576c1 *vignettes/figs/view_ML-1.png
7dc88e52020d8238ffb4cdab49626e41 *vignettes/figs/woodmice-tip-emphasis_readme-1.png
6ded541389407dc60cd7a05268579cb2 *vignettes/figs/woodmiceCluster1-1.png
ab0985e8095fb910b2ad1856782b7d14 *vignettes/figs/woodmiceCluster1_readme-1.png
2bb8dcc526533ca618c41786273f1d75 *vignettes/figs/woodmiceMedian-1.png
ef518521ce15ccccddc92c2823eb1f7b *vignettes/figs/woodmiceMedian_readme-1.png
27f232eb46a71e8d64a7055c14960042 *vignettes/figs/woodmicePlots_readme-1.png
3949e7ccccf70ad2de3326e78231347f *vignettes/figs/woodmicePlots_readme-2.png
84449c585f6f263748ac0a3ff380aa41 *vignettes/figs/woodmicePlots_readme-3.png
1e54b768b7f3fe891812fe25ff3c86a7 *vignettes/figs/woodmice_plotTreeDiff-1.png
b27bf6ef0476c50e535825324926305d *vignettes/figs/woodmice_plotTreeDiff-2.png
ec6bd2b0ab4b1289c93773fadf430584 *vignettes/figs/woodmice_plotTreeDiff_readme-1.png
3f4f11c52aa58c0e465b8bb8616ac2f0 *vignettes/figs/woodmice_plotTreeDiff_readme-2.png
c1e53a05ece3dbd2a77344fcaf167e2a *vignettes/treescape.Rmd
