6ecf2ea7ac53d9565003868188bad472 *DESCRIPTION
a97ad7a737176b78bc9216efa30411ea *NAMESPACE
282371e1141d5f864c74d2dbaf8e19fa *NEWS.md
97d53ae03244dfe50929724367c5e757 *R/dist.R
ba00d3d71912d69b5d5a123be9bec0b2 *R/hmm.R
d6627d3c3928889584f524dbfa73e7ab *R/utils.R
ca24eaa78060a501c3434404312a5cfb *README.md
ddc1f53e382cb0208d63a4148036dcb6 *build/vignette.rds
c12078f9a8906f5de7629a1f0170212a *data/datalist
4d64d0495f83ff68438500f30787395f *data/simChIP.rda
61fc8d7690f65a6b7ccccaa8f49e8c0b *inst/CITATION
2f0b7d7876e5f8c46f2ad3d24034a437 *inst/COPYING
cb3eee1b3aca58f489634c12651d7a57 *inst/doc/tileHMM.R
ff7d7b95b4eb1f5ead90c9adc1adc7c6 *inst/doc/tileHMM.Rnw
58bcc31774aa9a5766bc35ec5e0a0863 *inst/doc/tileHMM.pdf
96890854131419a9684192bf98f5d2d2 *man/baumWelch.Rd
1f1074141f64c5975fe9c32925672301 *man/contDist-class.Rd
ac360334601113afcf2a868a330ce3bd *man/contHMM-access.Rd
b5b04d870140d967342d8ac12e2ba18b *man/contHMM-class.Rd
09c6962b8cf38879422b9ea368fe6f99 *man/discDist-class.Rd
37c1f1a46371082fba7600d636ab3990 *man/dist-access.Rd
05269a328418961a5347baa861f3d00d *man/dist-class.Rd
fd92a861a0c1258bd11472d944c1662c *man/forward.Rd
2001682cad09f71372190433f6818f14 *man/generate.data.Rd
42e9fb0b8f86039178f804b61f986c3c *man/getHMM.Rd
e7d52ab2edcdcf03b78d113732daeee1 *man/gff2index.Rd
fbf5a405d57d87a7790e12e6ee930bfb *man/hmm-class.Rd
0c4018f7302ea268bd1b0620372d4336 *man/hmm.setup.Rd
b48b3bc2131afc0e42d11faf5b99b95e *man/initializeDist-methods.Rd
5ea55bae81975f79a1c61cecc818b2b3 *man/initializeHMM-methods.Rd
7b9964de2edfcb60a600b01e3e74f63f *man/internals.Rd
f4bc6790d13a9a57db5bd3cdfe5eb441 *man/logSum.Rd
f0f5f2647bb675bfa262cc526a4720d6 *man/plot.Rd
e63155907285010c9baa152d47429fdb *man/posterior.Rd
015ab91ab600c24c53a07f09bdc9c4cf *man/reg2gff.Rd
a786190c2cf3e5d6750632fdf2a5787b *man/region.length.Rd
becc51f8fc8749530d9d931197a426a2 *man/region.position.Rd
11f65eeb4900d8d2b10a3c843f586b6f *man/remove.short.Rd
3a60be6f5b3011e3edba6dca9b17056d *man/sampleObs.Rd
078e723b2578d812fc2dac3a2011e351 *man/sampleSeq.Rd
9a457b4ff15adbdf8997f4f276b9af25 *man/shrinkt.st.Rd
ae8e35a3ba81d086bad6df8220d6ac8b *man/simChIP.Rd
e49209359e97ae63a26f28f039eb08bb *man/states.Rd
21e8e6dbaf28872b23d63fee2ef7a6e9 *man/tDist-class.Rd
1aa89318b1434933813cb271fab4891d *man/tileHMM-package.Rd
e951e21ce545d87806a1a8f13ef2bd5a *man/viterbi.Rd
a73ddfcadb999ffdde44c029e39b74e9 *man/viterbiEM.Rd
51df856d7684f92aff3af0ab85d267dd *man/viterbiTraining.Rd
1ea5a16619a080c7a1d864bc1e0185ef *src/tilehmm_lib.c
bb51310978192c3301b7f8372a526d4b *src/tilehmm_lib.h
ff7d7b95b4eb1f5ead90c9adc1adc7c6 *vignettes/tileHMM.Rnw
