a6ef7757ad33b2b90c56e5a0719cf26e *DESCRIPTION
19facde95367a1609a7df5a8a96eb6ee *NAMESPACE
97d53ae03244dfe50929724367c5e757 *R/dist.R
ba00d3d71912d69b5d5a123be9bec0b2 *R/hmm.R
bc7878457559b4ab6dfbaffb3f677301 *R/utils.R
2d65d12712c209b0a1e196c9e5ca79d1 *data/datalist
4d64d0495f83ff68438500f30787395f *data/simChIP.rda
56a827ec034119f60ec9ffe7a3108d85 *inst/CITATION
a02dd767410d8bfc6a87f51e5f438b0a *inst/COPYING
9f47de41c4d0faad09879f6ea11c64ae *inst/doc/tileHMM.Rnw
58bcc31774aa9a5766bc35ec5e0a0863 *inst/doc/tileHMM.pdf
a0c0b1a869fbcd06320ceef1468dd5af *man/baumWelch.Rd
9c3b454eb9e31c1cdde040dfc9ff005b *man/contDist-class.Rd
d9f82bf695202995a615a1a533120c39 *man/contHMM-access.Rd
8c3eba626a5ef6f41be9e1d057a604c9 *man/contHMM-class.Rd
b6ad31ac9fadf74e2c04aa6638ae88ae *man/discDist-class.Rd
37c1f1a46371082fba7600d636ab3990 *man/dist-access.Rd
58830e3ae93951468a7a628d690ae806 *man/dist-class.Rd
b4cd361e2e2742606fd9e504cf4dae5c *man/forward.Rd
dc1b277e732700e7ffcbd2d79739aa19 *man/generate.data.Rd
d7b680f0290e1155500d42eb5e8f44b3 *man/getHMM.Rd
0283994524bc5dd6b75105423f71a3ab *man/gff2index.Rd
8efafd50c80000f43162ec7e296a6eea *man/hmm-class.Rd
a157ff33b7956d95b50eff04deab583b *man/hmm.setup.Rd
6c15d0777c6835eb2de05fe0ec05cb46 *man/initializeDist-methods.Rd
5ea55bae81975f79a1c61cecc818b2b3 *man/initializeHMM-methods.Rd
c779cae2bda8e93fcc949018ed9920b0 *man/internals.Rd
4e18f3528f22be8b2adec0aeaf70a9b8 *man/logSum.Rd
beeb638bbfc3c0b775cb433ed241dfcf *man/plot.Rd
f25c3bab1a7bc7ad67ba4375676ca984 *man/posterior.Rd
b2b66af4541e35fe24a85325bea68c0e *man/reg2gff.Rd
87a4363c2c51f2ecdacbf21e01b129bc *man/region.length.Rd
221602058154a5d200143bdc49f80089 *man/region.position.Rd
fdf08274bb4e41be901422733b9e2539 *man/remove.short.Rd
eb0939c9c2ac1fb176c952ffe847cf75 *man/sampleObs.Rd
09c4d8a2e1e96d718fb42cccbc226c96 *man/sampleSeq.Rd
0cb880e33c381cd364f59c398b46a0ee *man/shrinkt.st.Rd
fecfd935d4d9c4dbc3ffc86246514e91 *man/simChIP.Rd
82c085579f93af91757ac231b6ad0e92 *man/states.Rd
46fbb784a1f04860e3a26879d1683445 *man/tDist-class.Rd
245db6d86fa38ed8e84607e18ae399cd *man/tileHMM-package.Rd
f0a27b4558a558cd14360724ba9cc096 *man/viterbi.Rd
27beebf337401a90181e41896f76b47b *man/viterbiEM.Rd
13129146022fc9138d6932249064e48c *man/viterbiTraining.Rd
1ea5a16619a080c7a1d864bc1e0185ef *src/tilehmm_lib.c
bb51310978192c3301b7f8372a526d4b *src/tilehmm_lib.h
