a3c0e8148c39075a261996c72a921a15 *DESCRIPTION
0626e3dbe5deaae710074ee0081f119e *NAMESPACE
e96382dfc876ba6af180a79ed52adbda *NEWS
a492484c01e95e6d4723ad31b10e671f *R/RcppExports.R
2633fba8b47fd34b469213b27c8b48cc *R/crosses.R
5f1df84921db02dccd94917405e6be9e *R/dataproc.R
f977e8bb7702a8e3025487058ec3fd4c *R/datatools.R
4c6553528b5c7e77ec46271046893c8d *R/diversity.R
09e97d180f8aac8235bad9f587bbb417 *R/docdata.R
a186e0ffef28efdc7076680391c58c2d *R/filters.R
18d7cf76bf4e751aefadf8a6f64e3347 *R/graph.R
18d779083054a272f663d525dad32d09 *R/infoanalysis.R
e0c620a471f9afa8ab46e7284087e3a6 *R/io.R
9f8d30d8e0cade55c27ab0dda451755a *R/kmers.R
ef81c66aa4f2c28c94dd9b4dd0b0bb7c *R/measures.R
f29f5cddfe3ab5afebd426d69233010f *R/mitcr.R
1099f3e786d5313ed07176aa73bbff5d *R/parsing.R
d5042d944efa9b3c14f18c015e819e4c *R/plots.R
4bb2940356c4b42dce7771978f8fc794 *R/repdiversity.R
0d3a9787270d1ff3df620986c03c8dbb *R/repoverlap.R
be7a2080ed6c7f3de0554ea39bda19e3 *R/segments.R
0bac2b82ac075c676934af5dc34de7a8 *R/shared.R
d7cd7678241525666852f7f92a2c03c2 *R/spectrum.R
385c4c5a70bb2b36eb2df94e89bd02c2 *R/stats.R
3257c9831e8d13fbe1d9773f3bddd5ed *R/strtools.R
19045b0831f2eb708556ffaf09c294ac *README.md
404c4bbb5d8ed6a0ec81676172c20969 *build/vignette.rds
89d6d3f555bed92c5ed36af98b04c7a4 *data/beta.prob.rda
0b472b1afd448af9612974a7033a82bb *data/datalist
3e5199fd3d3acb248adfe09b59f39bfd *data/genesegments.rda
d813629cc80fb283b5d34dd61d37d52a *data/twa.rda
8253da4f56f8eee73ad14945e15ab374 *data/twb.rda
9beb0651b51d566bb9ba008ae0bf49ac *inst/CITATION
8dd437aa67de610b66bd177f3aa5ea6b *inst/crossanalysis.report.Rmd
b3e30dfc5fa127c08986ec4efbf74f9b *inst/doc/tcrvignette.R
35c614d79a8a7fd702590da7fb752fba *inst/doc/tcrvignette.Rmd
ccc2580595e9b254e20b53b2e14d1cac *inst/doc/tcrvignette.html
0d8030aaef0685c2f34fc53cce1adfac *inst/library.report.Rmd
012ed5593daacdcd716f4bbdc3c1374e *man/AA_TABLE.Rd
01110de7ad261da0385e7479db911751 *man/apply.symm.Rd
06a4cd7a63ae100769c4fc7abae0374a *man/assymetry.Rd
09490d2af1d7513f0d5913f093cf45fc *man/barcodes.to.reads.Rd
6b12978854818265c9257153ab9cf39f *man/beta.prob.Rd
f7737c6fcce336d4e1cf80e0a5542066 *man/bootstrap.tcr.Rd
cf39e90f7667a14a6c66ab97cb5719e1 *man/check.distribution.Rd
f14156cc32b99e02533c8529a2e166a2 *man/clonal.space.homeostasis.Rd
fcd309e83b8bb1703ca77ead0e31d74a *man/cloneset.stats.Rd
b37d4346f54b548385dcf2b46fc52705 *man/codon.variants.Rd
d636ac224a9a71052b0d6d463bed136a *man/column.summary.Rd
a4c750b315fe955e85f36fa30835f54e *man/contamination.stats.Rd
3cb041fe4631e7a351e5eee8318ff2d6 *man/convergence.index.Rd
389ddc85664a6fe3c0aabf73393b1729 *man/cosine.sharing.Rd
5ce9d10108798ab059b5ce8d3e79b695 *man/cosine.similarity.Rd
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19dcc83fc557bf744d0fcf0fa999665a *man/entropy.seg.Rd
4d2afe1802acd6e0cbbbedf3836582c4 *man/find.clonotypes.Rd
a9081fd71161ed003f0b18a302754fbb *man/find.similar.sequences.Rd
b725d8fee62477f4ec113c3ed9da4191 *man/fix.alleles.Rd
1e0885dfe9c6a31ec9afc4dc17d26fd5 *man/gc.content.Rd
ae5cc0f01ac296d0e898970018513cd0 *man/geneUsage.Rd
a566fac9166900e12fe42d6cca9d4970 *man/generate.kmers.Rd
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7f4a9238cdffd3d2b68b5fc323416e77 *man/get.all.substrings.Rd
524cb2fce75ce1722163633009788478 *man/get.deletions.alpha.Rd
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831133eecd093a6fa5c9158cf9b389df *man/get.kmers.Rd
04dd3c643f856d0541a2c168d1035d70 *man/gibbs.sampler.Rd
6210acfce1b4e73345fa2fd693a58fbd *man/group.clonotypes.Rd
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e9259c07c8caae242720f3e96186aefa *man/intersectClonesets.Rd
3fe65a58d3a4aed67e14c7fcb4616fd2 *man/inverse.simpson.Rd
45745aac1cd3a97461d425ed4057f94e *man/kmer.profile.Rd
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9d9946bab510122b93fcf0b01f4fbbf2 *man/loglikelihood.Rd
2363cc8b1338d66c6eb7ac324197effe *man/matrixSubgroups.Rd
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a2a684980e44ae3fa9cd4c412aad1f98 *man/ozScore.Rd
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6f883df852469a739400b8c22568dada *man/parse.folder.Rd
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37be4fe8387ef7bbe503ecd8d7e3c226 *man/pca2euclid.Rd
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7121ec6958300fffcad3ce83336ad7a6 *man/rarefaction.Rd
4e13eafd8d7b4e1c261ab2e30696597b *man/repDiversity.Rd
8c1afa992a51ff8d427dcd619842f0da *man/repLoad.Rd
774a89b0ccb97b2b755ce7e4983e0086 *man/repOverlap.Rd
141ba6ce5981527414dfd259fbc0a2f4 *man/repSave.Rd
732e89bad7e31d12ae5640a701d32748 *man/resample.Rd
90531159fc0893d84c3bb207245af439 *man/revcomp.Rd
c58b65e7cb1f33fa1846997315739edf *man/reverse.string.Rd
068fc97db3076fabfbd0e265163084fc *man/sample.clones.Rd
b801078a00c9a2c37de83f63dea7187b *man/sample2D.Rd
aadc67f1b44808907f0d650283c7ee1e *man/segments.alphabets.Rd
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244fb3b612dc921b6808d7f68531e553 *man/set.group.vector.Rd
e29d46180a426bbff08ea79665e03096 *man/set.pb.Rd
10e62972c082ab0e8242293e202281b1 *man/set.people.vector.Rd
693a6adfbac3f5ac9c70e9d926b4e15c *man/set.rank.Rd
881d70c0abb9e046fbdcb48b6e5addf2 *man/shared.repertoire.Rd
e74f81f80da6818b0f3940b0df0b0e6b *man/spectratyping.Rd
f1f9c6f25e63285bf3bee234f56bcb82 *man/startmitcr.Rd
84298962e48b4bf59ae7b423d46482de *man/tailbound.proportion.Rd
43a5684ae5f2b76ef4c6c32890603eae *man/top.cross.Rd
9e792a302618da0f3aae2ef816018620 *man/top.fun.Rd
e7dc247d396669030f826907a8a37961 *man/twinsdata.Rd
d672800230c34dbf7a69958eecebd90b *man/vis.clonal.dynamics.Rd
efd6e1eef5532f8d6fcf599d8d7ec30e *man/vis.clonal.space.Rd
e9a0b8a4257e08fd1ff2ae422af558b3 *man/vis.count.len.Rd
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05d936735989faba19c0ee1ab1cef4f4 *man/vis.group.boxplot.Rd
75e280d80c1c114e89b10a5275c96d87 *man/vis.heatmap.Rd
a27ce7a51ec77821a9f4a5e2885af8fe *man/vis.kmer.histogram.Rd
44e281b2202c378716872718edf83e2e *man/vis.logo.Rd
7a480ed6dfc9f843e4527d04a4dc7662 *man/vis.number.count.Rd
376f1bab5c154de84f59df0ea8db0086 *man/vis.pca.Rd
a7ba60bd7af08ce4fe2681ca1e67ed17 *man/vis.radarlike.Rd
5f937a102e557d2f1bccb562700d43fc *man/vis.rarefaction.Rd
4833bd3c1ec73b24565e6968a3e48140 *man/vis.shared.clonotypes.Rd
c62e843326201dadf634b63c999b2d90 *man/vis.top.proportions.Rd
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars
e69034809117f2a8b410ff83c0ffc74a *src/RcppExports.cpp
8613b0d97d73171a1f6a526d93a87ee9 *src/neighbour.search.cpp
35c614d79a8a7fd702590da7fb752fba *vignettes/tcrvignette.Rmd
