dd99571cf261d60db137e181d3410e94 *DESCRIPTION
c8cc82297572abf95885982b4b516655 *NAMESPACE
b778a6a8dad3ac00803d824842feb740 *NEWS.md
88847e762270f28cd7bee90cbd9539ad *R/IBDprob.R
ac49931770728504575cca4b278d87be *R/RcppExports.R
eb6ad331e03d6dfc430f80ac8bce293c *R/allGenoPlot.R
7791bfb24a9035c91be44dbd23064e8d *R/getProbs.R
e7587ef705a2b7494b3e70106333ac5a *R/meanProbsPlot.R
02d10a597eb362447d280a28710c8581 *R/pedPlot.R
62234c53ff9138d70243f78d9c9e6217 *R/readIBDs.R
08cbed36faed00bc5bb9762e98fb5a81 *R/readRABBIT.R
3ebe48ff1fab95ae4e6eb57991878e0b *R/redundant/writePedigree.R
953a11b8c284361b4b11d4b08a611376 *R/singleGenoPlot.R
cfaac326698d6fbb34a4feb63e89a792 *R/statgenIBD.R
820105a5c9ca8fcea74f35aec990aa31 *R/totalCoveragePlot.R
0a1c7301cf7ef4fadb937dc41ffc8939 *R/utils.R
b4bef803c3065b70a5c05b0a0d275f2f *R/writeFlapjack.R
bab72000704c75ed13543e67f154ab7e *R/writeIBDs.R
f2cd2d044d828ad5bf57994f27c9e1e3 *R/zzz.R
594495503c4d727dea6bbf45dfd34118 *README.md
2836b2c5db38c9819380bd093383d89d *build/partial.rdb
5cb05fac424c89ddf9b776133d03aa7b *build/vignette.rds
f3890ffa98cf5516421a5ed09a2b14c2 *cleanup
ce21673fcf64ca74caf93207d9d5a951 *inst/doc/IBDCalculations.R
69d16d6359f3a1bb06c25cff80efdf99 *inst/doc/IBDCalculations.Rmd
e7f40e410cd51b1d82350045af507831 *inst/doc/IBDCalculations.html
aa24ac0b04654d43e52109c18ece2338 *inst/doc/IBDFileFormat.R
13336322ea8c7670b5694e2d03271493 *inst/doc/IBDFileFormat.Rmd
30fecc862f9c8c5135e5eacb105fbae4 *inst/doc/IBDFileFormat.html
fde3a6cf9efea6888862e4c963cc5514 *inst/extdata/SxM/SxM_IBDs.txt
748ebe3ce7bf92423860c1f4618ebdee *inst/extdata/SxM/SxM_eval.txt
2038f5a11a102fbabbfb2a9de6807556 *inst/extdata/SxM/SxM_geno.txt
f1fd473d3147b6a0e77ef9f362889e8b *inst/extdata/SxM/SxM_map.txt
8f9a4bee07e098e636eae83ebf731642 *inst/extdata/SxM/SxM_pheno.csv
9cc974e883d7a16c79a76f352038fc39 *inst/extdata/barley/barley_magicReconstruct.zip
2f75e4ca961caf23c554807e10a8c39b *inst/extdata/barley/barley_pedInfo.csv
4dd32524c457c265dd6e7c9570dd5e2c *inst/extdata/multipop/AxB.txt
57838653bfc2b65efdf458a600f93b46 *inst/extdata/multipop/AxC.txt
44e3415b4a9991be9e6a7fcde86cb48f *inst/extdata/multipop/mapfile.txt
bc42a883ecd54025413aa35ed81a6cbb *inst/extdata/popC4S3/cross.txt
e57ee0922a83445457a5303c4e5ee813 *inst/extdata/popC4S3/mapfile.txt
c3479bc2fa6e16d64a344c8023b28aac *inst/extdata/popF4/cross.txt
e57ee0922a83445457a5303c4e5ee813 *inst/extdata/popF4/mapfile.txt
92dd2e7f50bb5879a9fd59006567910d *inst/tinytest/ABC_markers
052fc43efb920258fac8d1ca11b1dcd8 *inst/tinytest/AB_M1_1
0b316b3cd63a068056e1d223941276da *inst/tinytest/SxMIBD_evalDist
0b316b3cd63a068056e1d223941276da *inst/tinytest/SxMIBD_evalPos
08f4ea0fab6678c60999030ebe7a8c4a *inst/tinytest/SxMIBD_evalPosChr
d37eb29989c9e934535027076291cc2c *inst/tinytest/SxMIBD_map
5eae836b584291371b9445e1fab530ae *inst/tinytest/SxMIBD_markers
d37eb29989c9e934535027076291cc2c *inst/tinytest/SxMIBD_pedigree
62fd2da32186629d326543e8442e54a5 *inst/tinytest/test_IBDprob.R
c66981901c57882bd370abe20ceba34f *inst/tinytest/test_c.R
4bff958443fc38235a718693ee7b73bc *inst/tinytest/test_calcIBD.R
cdfdc89bed52fca6e19dc88ad624b9b9 *inst/tinytest/test_getProbs.R
9282298f381943e04c1bc1f55205ff49 *inst/tinytest/test_readIBDs.R
6e9a16e191d2be611b37a45dadc99090 *inst/tinytest/test_readRABBIT.R
d0081008a5aefd1da45b201584e8e5fc *inst/tinytest/test_writeFlapjack.R
9125a3c2f5518b784c8f7e57ed00dd5d *inst/tinytest/test_writeIBDs.R
57b9951de6eabbeb5c11b4e8f58e428a *man/allGenoPlot.Rd
95926030fefe11967c637588e88014b4 *man/c.IBDprob.Rd
3ae349c2ef65c340596e79ccc31e3666 *man/calcIBD.Rd
27eac348f38bbf19ca5437f5dd4abdee *man/getProbs.Rd
af568aba7ab85bbfeeab43ce6a24e49a *man/pedPlot.Rd
6f22d589cb38eb5fdc25f38c50895899 *man/plot.IBDprob.Rd
bde09461201e365c5c829bcfa0295a7f *man/readIBDs.Rd
e3ea4d4126341f16c705faece924ec87 *man/readRABBIT.Rd
50daa942dd421d0f3c12aa5ecab1f513 *man/singleGenoPlot.Rd
02c1f9c45a059cf73e616ecb2914eaf2 *man/statgenIBD-package.Rd
29b093d83c37111d3dd783e8cd3c12b3 *man/summary.IBDprob.Rd
cabb3a89f1bae90e0f26ac82c7099cee *man/writeFlapjack.Rd
3fe012c809fe08c27c67a90a408b6935 *man/writeIBDs.Rd
27db97d261773838b5c1ef6017688808 *src/Makevars
284ad99621778641d35966f098e10ef5 *src/RcppExports.cpp
9dc7b1584ac87201191882e62ae92055 *src/calcIBD.cpp
c58b34916c6a36ce1f940feb30829313 *src/general/HMMalgo.cpp
c8a368d16502c9b5f403d52640ed4fcb *src/general/HMMalgo.h
c4bdb5caba1e650ced61494b04c49be5 *src/general/InhVector.cpp
160acd8b6fc16b6a42e8e60d0c8bc521 *src/general/InhVector.h
18f4b020e902addb7d7c61f58cc5038a *src/general/OrdGeno.cpp
155391c2a9cfc89d130c713bdb5bb9e6 *src/general/OrdGeno.h
f5a9d9271a847b3d1a290b529df1cce1 *src/general/TransMatSym2D.cpp
def87bb01fc92121101ccfa5a8ae2986 *src/general/TransMatSym2D.h
051fa8613e617d3f66f7c67c1d0dab99 *src/general/convert.h
fbc03154e1a2ff3346f020b1ea6ee04e *src/general/ibdexcept.cpp
9b8c3cac7ba5863d55b499e821c14f4a *src/general/ibdexcept.h
d812370569c1e0468463c5bd743b2fbe *src/general/matvec.h
204ae61030b9ed240ff75b0d3e4164ad *src/general/misc.cpp
1080ebd0b24e50f4794de91abc41b7eb *src/general/misc.h
3dd298056038d4b9c49ce38855a59b75 *src/general/util_genetics.cpp
f17535cb2951fb1d3c8826243a59acca *src/general/util_genetics.h
c47111267a0ff5b3f8a9199e78eff63b *src/pedigree/Loc.cpp
d9ebb27d48bf051863d08679307e9dd6 *src/pedigree/Loc.h
f386dd4f3d9ec253eb166d9da81d643f *src/pedigree/analysis_fam.cpp
87533005444d274d14fd25569f0e141d *src/pedigree/analysis_fam.h
c1ae51cf942cd1c648b1340d4813dd0a *src/pedigree/crosses.cpp
c3175b36e1fc4c7475051d7cf1aeb86a *src/pedigree/crosses.h
3a49e474a5d46ff2dc6ee83d17c3c382 *src/pedigree/mainR.cpp
603cc9a5bae7be64e3b73f62a2246a5b *src/pedigree/mainR.h
b537896608f3a6086e9083452f38e849 *src/pedigree/markerscore.cpp
99ca407f1edcd7c35794dcda87732a64 *src/pedigree/markerscore.h
6574cca1e683bb9ff5f36a6a8ea803b9 *src/pedigree/popt.cpp
783d828e2930334f916b35f7910f5631 *src/pedigree/popt.h
42d69396a9df9df40b75055e01754208 *src/pedigree/read_map.cpp
7f8f6dea744a667f6685a32c5632a65f *src/pedigree/read_map.h
17bbc7b0998cac9a0144177c0dc0569f *tests/tinytest.R
69d16d6359f3a1bb06c25cff80efdf99 *vignettes/IBDCalculations.Rmd
13336322ea8c7670b5694e2d03271493 *vignettes/IBDFileFormat.Rmd
1308659265e2eb087728ec1358dbcfe1 *vignettes/SxM_flapjack.png
bbd4992be2b631400f23e250aa8b412c *vignettes/bibliography.bib
