14fc35b8b4ef67ed933bebfba82bacfd *DESCRIPTION
2462716c9cdc848342335e2c6300a107 *NAMESPACE
bba9b9cefe784577c101133813e38e2f *NEWS.md
33b3004d460f2cb1c51db5c526637286 *R/IBDprob.R
216fab45ba68f3658735af6df18053ea *R/RcppExports.R
c13e41137e27df93a1f5e78f7e13a0b0 *R/allGenoPlot.R
b6566a8ac437658c23a028678987f699 *R/getProbs.R
93f87336d879b505a88096a231826977 *R/pedPlot.R
cb6868335cbc0b6e1580d794a81dbf74 *R/singleGenoPlot.R
45c8792d6db26e17714fcf2590233341 *R/statgenIBD.R
2acc8f9aad00be1e4b185d62fc2299e8 *R/utils.R
a7474fe1645a10750ad5756c57bc89a5 *R/writeFlapjack.R
f2cd2d044d828ad5bf57994f27c9e1e3 *R/zzz.R
594495503c4d727dea6bbf45dfd34118 *README.md
48ba9a6cd98985440e48f32033ce1f6a *build/vignette.rds
f3890ffa98cf5516421a5ed09a2b14c2 *cleanup
092e6be0ed4d90aeaa542101dfe8f9cf *inst/doc/IBDCalculations.R
29cb319de0c3bbb4233ede56d8043377 *inst/doc/IBDCalculations.Rmd
a96412732e72e19351192b94ad513179 *inst/doc/IBDCalculations.html
748ebe3ce7bf92423860c1f4618ebdee *inst/extdata/SxM/SxM_eval.txt
2038f5a11a102fbabbfb2a9de6807556 *inst/extdata/SxM/SxM_geno.txt
f1fd473d3147b6a0e77ef9f362889e8b *inst/extdata/SxM/SxM_map.txt
8f9a4bee07e098e636eae83ebf731642 *inst/extdata/SxM/SxM_pheno.csv
4dd32524c457c265dd6e7c9570dd5e2c *inst/extdata/multipop/AxB.txt
57838653bfc2b65efdf458a600f93b46 *inst/extdata/multipop/AxC.txt
44e3415b4a9991be9e6a7fcde86cb48f *inst/extdata/multipop/mapfile.txt
bc42a883ecd54025413aa35ed81a6cbb *inst/extdata/popC4S3/cross.txt
e57ee0922a83445457a5303c4e5ee813 *inst/extdata/popC4S3/mapfile.txt
c3479bc2fa6e16d64a344c8023b28aac *inst/extdata/popF4/cross.txt
e57ee0922a83445457a5303c4e5ee813 *inst/extdata/popF4/mapfile.txt
dbc463c6c279f4dac224202530acaf9b *inst/tinytest/ABC_markers
052fc43efb920258fac8d1ca11b1dcd8 *inst/tinytest/AB_M1_1
72f9f17896ae6a1d17e7abe0aa0be5ad *inst/tinytest/SxMIBD_evalPos
9edce51a635e704dcb411ae57eb19b29 *inst/tinytest/SxMIBD_evalPosChr
d37eb29989c9e934535027076291cc2c *inst/tinytest/SxMIBD_map
fcef78b6d42a831bac55bb7f4c4d3405 *inst/tinytest/SxMIBD_markers
d37eb29989c9e934535027076291cc2c *inst/tinytest/SxMIBD_pedigree
f6cd6197bbad02307ae522018c03aa22 *inst/tinytest/test_IBDprob.R
2cd6c1ba2c967b041ed9bb2401a35c1e *inst/tinytest/test_c.R
d7d577281d816634ce030c0be985e428 *inst/tinytest/test_calcIBD.R
cdfdc89bed52fca6e19dc88ad624b9b9 *inst/tinytest/test_getProbs.R
d0081008a5aefd1da45b201584e8e5fc *inst/tinytest/test_writeFlapjack.R
57b9951de6eabbeb5c11b4e8f58e428a *man/allGenoPlot.Rd
fa3f970df7fe072a78b5c6d3210d9210 *man/c.IBDprob.Rd
951484ba6736a24b220bab5e6a80973f *man/calcIBD.Rd
27eac348f38bbf19ca5437f5dd4abdee *man/getProbs.Rd
b25da7dc0d6c7462ee1bfdcee561100c *man/pedPlot.Rd
b1f3bfe9c0bd3f0cc44bd6016b449210 *man/plot.IBDprob.Rd
50daa942dd421d0f3c12aa5ecab1f513 *man/singleGenoPlot.Rd
e351e0f01db8b3b12b1b79651a8282f4 *man/statgenIBD-package.Rd
29b093d83c37111d3dd783e8cd3c12b3 *man/summary.IBDprob.Rd
cabb3a89f1bae90e0f26ac82c7099cee *man/writeFlapjack.Rd
5277175d5655303c920b9ebfb4082368 *src/Makevars
284ad99621778641d35966f098e10ef5 *src/RcppExports.cpp
448dae73896279715c230c985aa42610 *src/calcIBD.cpp
c58b34916c6a36ce1f940feb30829313 *src/general/HMMalgo.cpp
c8a368d16502c9b5f403d52640ed4fcb *src/general/HMMalgo.h
c4bdb5caba1e650ced61494b04c49be5 *src/general/InhVector.cpp
160acd8b6fc16b6a42e8e60d0c8bc521 *src/general/InhVector.h
18f4b020e902addb7d7c61f58cc5038a *src/general/OrdGeno.cpp
155391c2a9cfc89d130c713bdb5bb9e6 *src/general/OrdGeno.h
f5a9d9271a847b3d1a290b529df1cce1 *src/general/TransMatSym2D.cpp
def87bb01fc92121101ccfa5a8ae2986 *src/general/TransMatSym2D.h
051fa8613e617d3f66f7c67c1d0dab99 *src/general/convert.h
fbc03154e1a2ff3346f020b1ea6ee04e *src/general/ibdexcept.cpp
9b8c3cac7ba5863d55b499e821c14f4a *src/general/ibdexcept.h
d812370569c1e0468463c5bd743b2fbe *src/general/matvec.h
204ae61030b9ed240ff75b0d3e4164ad *src/general/misc.cpp
1080ebd0b24e50f4794de91abc41b7eb *src/general/misc.h
3dd298056038d4b9c49ce38855a59b75 *src/general/util_genetics.cpp
f17535cb2951fb1d3c8826243a59acca *src/general/util_genetics.h
c47111267a0ff5b3f8a9199e78eff63b *src/pedigree/Loc.cpp
d9ebb27d48bf051863d08679307e9dd6 *src/pedigree/Loc.h
f386dd4f3d9ec253eb166d9da81d643f *src/pedigree/analysis_fam.cpp
87533005444d274d14fd25569f0e141d *src/pedigree/analysis_fam.h
961a4f50014997ac00c5726eeb7f6199 *src/pedigree/crosses.cpp
c3175b36e1fc4c7475051d7cf1aeb86a *src/pedigree/crosses.h
3a49e474a5d46ff2dc6ee83d17c3c382 *src/pedigree/mainR.cpp
603cc9a5bae7be64e3b73f62a2246a5b *src/pedigree/mainR.h
b537896608f3a6086e9083452f38e849 *src/pedigree/markerscore.cpp
99ca407f1edcd7c35794dcda87732a64 *src/pedigree/markerscore.h
6574cca1e683bb9ff5f36a6a8ea803b9 *src/pedigree/popt.cpp
783d828e2930334f916b35f7910f5631 *src/pedigree/popt.h
42d69396a9df9df40b75055e01754208 *src/pedigree/read_map.cpp
7f8f6dea744a667f6685a32c5632a65f *src/pedigree/read_map.h
17bbc7b0998cac9a0144177c0dc0569f *tests/tinytest.R
29cb319de0c3bbb4233ede56d8043377 *vignettes/IBDCalculations.Rmd
1308659265e2eb087728ec1358dbcfe1 *vignettes/SxM_flapjack.png
f1a270aaad0f4a1c7ecaa245383d2506 *vignettes/bibliography.bib
