5785286ad5ace6c7013238c56fde8786 *DESCRIPTION
f44ac8e66cdf16e599a2038e1677642e *NAMESPACE
5a712a6755c5a7068432f81ac34438b4 *R/zroutines.R
e2215fa747f6340f8977e18c262454d0 *README.md
470c97705c8063690e5be95a0693d1ec *configure
a9e802492eee8d02aa22d273f2ed3c13 *configure.ac
be2c5e8e0c3ecfb2e704ae7782f53fc8 *man/add.broad.peak.regions.Rd
54c0f914b22a2372227f22014e83dd10 *man/densum.Rd
180f2ad88f4afb2dbe5b9423158bf609 *man/find.binding.positions.Rd
c0310d39b0eae4edc6af6dc1581c6b12 *man/get.binding.characteristics.Rd
ec053c69d5fa2610b5469aee503f11ff *man/get.broad.enrichment.clusters.Rd
120769400978a543a5330adb4c1aad8f *man/get.conservative.fold.enrichment.profile.Rd
9fc082157841e233319244e60221ffa1 *man/get.conservative.fold.enrichment.profile2.Rd
3cdf7854ca636eb095af451f212829d1 *man/get.mser.Rd
c85e1e627f6fd2668ed6eae6b8679a1b *man/get.mser.interpolation.Rd
fe7fa4c525f2fc0422f0fa3e7fa1a824 *man/get.smoothed.enrichment.mle.Rd
c04f3fe45c75c40334415fac547759dd *man/get.smoothed.enrichment.mle2.Rd
f36594e834f536f09b767856c2d5f347 *man/get.smoothed.tag.density.Rd
d0ef6fa196b7482412869ec7cfdc7980 *man/output.binding.results.Rd
6c78ced4652e5f2ab28016f7e481db7d *man/points.within.Rd
4d61d29b7aaada7a887b2a56d035cbc0 *man/points_withinFunction.Rd
b554b8b403f046e6fbacfe2531e96142 *man/read.arachne.tags.Rd
a714eaeb0cc803ad9fc6caff0c92f2cf *man/read.bam.tags.Rd
19ea9eb29a5ec1d3c307ef53f0c28276 *man/read.bin.maqmap.tags.Rd
21878f5fb0fd4a22b741728c60b1b2ea *man/read.bowtie.tags.Rd
be89aa4c7f4bc07a7109ba9d5ca0ebbb *man/read.eland.tags.Rd
5f4976965e84079897e459a2611eac7e *man/read.helicos.tags.Rd
57910f9620caa82960ba92fa17597e6a *man/read.maqmap.tags.Rd
2e3d76a6a7b28adff8ce716d4801d41c *man/read.meland.tags.Rd
47398b3d4a00e656bcecb61d744a51e3 *man/read.short.arachne.tags.Rd
0c23a43dd47b60518280fde4f08247df *man/read.tagalign.tags.Rd
b640b6584e4d5f47c83173e1b23640c6 *man/remove.local.tag.anomalies.Rd
46a10b9b5e8019a41d72bfac5eac87a8 *man/select.informative.tags.Rd
db41435b342984f3bfe76b8afb858a91 *man/spp-package.Rd
d2b6c4a83c612aa2e73cfcd7c270e210 *man/write.broadpeak.info.Rd
718b280ad26d9575ba799a33df19828a *man/write.narrowpeak.binding.Rd
359ddcdb6181b853df7eb754bcec13b5 *man/writewig.Rd
3d9bac31e0bb6590ce8544003d52cf0a *src/Makevars.in
7563d9a17bfae0f4bb648d859da1e50f *src/api_global.h
3b8d323235f9b76f32fb56985f2ba7c5 *src/bed2vector.cpp
0d2294ac5a53bca2b3a538a3e9fbe6be *src/cdensum.c
edff4c928e491daba8a54d5054a04090 *src/const.h
6ccf2ac5b9712bf69d59422ffb51ef06 *src/maqmap.c
c9a8a87c72a0c995a34b633c78a67de5 *src/maqmap.h
1685e4f2b94b513071df33ac901d4348 *src/maqread.cpp
08bf369a220a2bf9e67ca4867c670638 *src/pc.h
4c7be2edd4090d7f2e0ed8690a894e84 *src/peaks.cpp
77655400de9c02d01167c88678c717ed *src/spp_init.c
2d2e0daff49039dda0c37181c908767e *src/wdl.cpp
