d805513d2d0384ff540fd29468ecf115 *DESCRIPTION
201e12619a29e6056859e21fc4471c6b *NAMESPACE
71abee37e5f2896ccb3523ff5119fbd0 *NEWS
ceb864640fe88f88cd651d63b4bb46a3 *R/BsplineHaz.R
a5f7386292fdbad2442b799032a3e462 *R/GMRF.R
ee4cf8ba5f4ec6f08914719a08c8a9e0 *R/PsplineHaz.R
bcdec1c2a0e20402000be5f721dabf4d *R/RWprior.R
0378e11f399077edf1674bbc8d96d933 *R/baseHazST.R
9bb315d53c69f2c53967a1e6e43a6d4b *R/baseHazST_prior.R
b4d44beb6d8f9c19da1406309ba831b7 *R/basehazardspec.R
4d3da528b9eb77b5119e76b4fcc663cc *R/calibratemcmc.R
0d439b044d271eeb482f782d1f36fb1e *R/circulant.R
40228810f1e560daeb0a5723422d4a76 *R/covarianceFunctions.R
d41b691763e120df3dafd68a334c87c0 *R/exponential.R
70c906fabe52945bcd9535fe06e31cd8 *R/gompertz.R
27085ac5c5463949b1dd0c5f1f0f93c1 *R/log_posteriors_and_derivatives.R
4238796255058bf200c2a62c2ed1acca *R/log_posteriors_and_derivatives_SPDE.R
fd3e1997563c7dcc45cdcc8ae59681a5 *R/log_posteriors_and_derivatives_gridded.R
dab047e5a802a69b11fac74711a206d7 *R/log_posteriors_and_derivatives_polygonal.R
d8d4571e049a021023600a7b6f1fe8c5 *R/makeham.R
95519753d865e4d7b4d21504a69cfd77 *R/maplayers.R
82491f1fbc95deabea5066953c12f6a4 *R/mcmcIterator.R
69e4671257add0599775883f4f22408a *R/mcmcPriors.R
c890ed598f8b9106bc0b40520264568f *R/mcmcProgress.R
72cd615cb9c693a4de486736086c7d9e *R/multiWayHaz.R
9476a821d7b9ab6a87534be015dd7608 *R/nonspatial_log_likelihood_and_derivatives.R
30c6db048ec933ff4f144f563bb9852a *R/optifix.R
2ca6e99ddf0f947963887ed245d78631 *R/outputSummary.R
ed8a1da822432f70dadf3ab42f3b6dfc *R/partial_likelihood.R
7c5b45fb61645930da531a1facd91c81 *R/plottingfunctions.R
dc6f6806c0cd21e91e1b44c256727318 *R/postprocessing.R
3365fc326f441447a9aea0721031cdd4 *R/spatgrid.R
e900d6d58f3ac4624537136375fb7dc9 *R/spatial_imputation.R
b1f04ffa5c0f8b2c6a3d9530f3e2cd39 *R/spatsurv.R
b3d11bc5ea9821ef14cdc587e504528d *R/spatsurvMisc.R
1f2f53e0b5e362d1f05aed9bfe39b3d1 *R/splineFunctions.R
4e9e1b57ef10f6af24c23ec1635c42e0 *R/surv3d.R
96f74d555494354ee2316829eded84bd *R/survsim.R
f0b499f254a86ec73c7b6182d3a88eb6 *R/survspat.R
ebefa25693564f84aa76b059a1dc6929 *R/survspatNS.R
9a5e348a61bc5b31c33d3906560096b3 *R/tpow.R
e65f69f2bb638bfdaf8c5166c7a7972a *R/txtProgressBar2.R
46e4f25f90af03b7ec1f32c7811abda9 *R/weibull.R
e06b009e38ee7832728d20c7269f88ca *R/zzz.R
c96ba61e8ab6f57f570b4660251e6348 *README.md
4115a660ec635ba6536b8fca1690398f *data/fs.rda
aaa7fafe88660eb8d67e79cd9f9a05de *data/fstimes.rda
f5a4ee62bcddb9a34c2f8550405e8f92 *inst/CITATION
0d66bde3c4338fb8eb4d05145f6ab6c4 *man/B.Rd
b6123d3a3336aaedea89bb29f896501b *man/Bspline.construct.Rd
a0654ce44dc58551141b037d05899f64 *man/BsplineHaz.Rd
57fa4dc5f34011062c1ad3c145b7e871 *man/CSplot.Rd
54ce2c7097be594142f8ea4490c1ad91 *man/Et_PP.Rd
d5bfd2ced53594541091b828f4c8431b *man/EvalCov.Rd
dacdd6bb76beb7bfad24bfc1c8f754f0 *man/ExponentialCovFct.Rd
6e603e6ef0f09b0072a407d120f2241b *man/FFTgrid.Rd
1fb85c8ff86dbd0fec71c1acb816c9a6 *man/GammaFromY_SPDE.Rd
70d67a6544dd7921ee0acd87ca177c62 *man/GammafromY.Rd
02db35bebdd522e1b8a8da74df55f179 *man/Independent.Rd
dbb78516ab6fe2953fc5a0e280917a42 *man/MCE.Rd
374ffdbd42251ef9a73e160286882868 *man/NonSpatialLogLikelihood_or_gradient.Rd
c566833aca438d31d3530fed9ef036b2 *man/PsplineHaz.Rd
8f2778d84f8037a4e2f5c12c038bff9d *man/QuadApprox.Rd
ac055818aef1a67e1039ec6144612a7d *man/SPDE.Rd
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a36ea3b9263de3e3559427111cbd722a *man/SpikedExponentialCovFct.Rd
9375248eb4c0e91e59e7374aa8852f8d *man/Summarise.Rd
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91c906b62596caff6cc8e54a282c545e *man/alpha.Rd
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406a9b6926295b34b9ca881443bdf0af *man/boxplotRisk.Rd
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746dd4197dc490e9d98008c14784de87 *man/circulant.Rd
30c0965570c463ccb92e8a7093d7b501 *man/circulant.matrix.Rd
5698fcbb6af00d0e55fb884ddc92b7ae *man/circulant.numeric.Rd
045c0578ff131a45268fa1e7f9819dec *man/circulantij.Rd
aecb78a115e172782e5216a7599025c1 *man/covmodel.Rd
f0e644af959dd5b0af4ed1fc377c4003 *man/cumbasehazard.Rd
cc0b7eda9642f02c474878a5f6a907a2 *man/cumbasehazard.basehazardspec.Rd
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5acc2aee1fec997c83ac1a7003ce4438 *man/density_PP.Rd
d3e0949eb03988610561cde8e6bb5cbe *man/densityquantile.Rd
9177f89f468a153228680572ed4d8c85 *man/densityquantile.basehazardspec.Rd
156ee72155748099283b16c714fea32b *man/densityquantile_PP.Rd
63117d9d7497255eac7b854e6ea126a9 *man/derivindepGaussianprior.Rd
a965fcf60328193186b3ee24bd58c91c *man/derivindepGaussianpriorST.Rd
e5557aab3cbb805d6bf820f3cf6bbc68 *man/derivpsplineprior.Rd
14db9ddecfdcde74a51d89992376d877 *man/distinfo.Rd
00b9e863c362c2b43012c86ad21461f0 *man/distinfo.basehazardspec.Rd
f9d44663bf477c4b3225ad4b27525415 *man/estimateY.Rd
14dc4ce38f9801d02e409db6dbf4ade2 *man/etapriorGauss.Rd
68f2198fc60ca482c089cd4dfea7a741 *man/exponentialHaz.Rd
824c66a892df40714f266837fc80f884 *man/fixParHaz.Rd
94517b8f9847bd684fb1db373391ed87 *man/fixedpars.Rd
bdc49abfb2db537a6baf6eda49ed6dd6 *man/fixmatrix.Rd
21f130b25d28ad4596cb59cc97484064 *man/frailtylag1.Rd
49c705ce712e54d11b833f0613877c0d *man/fs.Rd
922ecba8fe82adcb3c02ca51a02e528e *man/fstimes.Rd
c3d68d6f7e12e028c6e3c46cc4bdc091 *man/gamma2risk.Rd
1da11f43e810754e571b8a4c14b2f5a8 *man/gencens.Rd
4561bf94805c74d2a4256a321dd2aaf2 *man/getBackground.Rd
87ede2d0e31539786b0182b0f3e3c51c *man/getBbasis.Rd
735b74b813d06d7947c967fdff06e923 *man/getGrid.Rd
a259a7100fed77078d85e5be8c63e72e *man/getOptCellwidth.Rd
841c8cab49ac3c5b2e6af9b9ebe314db *man/getbb.Rd
5e15ea951ec015eccea9f84fafd0647c *man/getcov.Rd
fee0e8b93e9fe78fb28fd5ddf599d665 *man/getgrd.Rd
5ae8c387ea2b79f8876f7315522f8579 *man/getleneta.Rd
dc0f90010a0ee609b48aef367ffc7460 *man/getparranges.Rd
bb507819c9ebe3d6744370838544c979 *man/getsurvdata.Rd
118d233ccecde4619f4217709ec46730 *man/gompertzHaz.Rd
a14dd14773bd4081016a954dda56f027 *man/gradbasehazard.Rd
f73ea217fbfabfd54eb0370af9e1a285 *man/gradbasehazard.basehazardspec.Rd
9d063999461be72ae47998d8007c88ad *man/gradcumbasehazard.Rd
a693096d2367be3ebf8db43ab3f293d6 *man/gradcumbasehazard.basehazardspec.Rd
dd87943350fb4c76e8164ada9ccf4764 *man/grid2spdf.Rd
80349eb33b7b178a2bd8cedc820535c7 *man/grid2spix.Rd
7d72d9d43662ddf39b54b249597c67a4 *man/grid2spts.Rd
402c4353820c739b311811c366c37032 *man/gridY.Rd
6f254719d0f74c8af9117417cac7dc89 *man/gridY_polygonal.Rd
319098491945607f569aaa56fd6fe860 *man/guess_t.Rd
d87b6655d483cb111d94da2d0badc4d5 *man/hasNext.Rd
63040e82eb77a3d52e9dccc00bf174b2 *man/hasNext.iter.Rd
2ec218ec981dc49b81a6b64491ea5dea *man/hazard_PP.Rd
c6c1a7eb476c7f059bffcc41599c0652 *man/hazardexceedance.Rd
ad3597affc7c3b1a35dc7d3e685bb870 *man/hazardpars.Rd
e202d9c44d91f63e8b3046ea8d6debd4 *man/hessbasehazard.Rd
985f4932649647ceedc39d4956c200a7 *man/hessbasehazard.basehazardspec.Rd
10be25cd1afb7455c9680eb25e5d8b62 *man/hesscumbasehazard.Rd
597d1c4a2acad535a393c2f3c1f37536 *man/hesscumbasehazard.basehazardspec.Rd
80fa7b39062e81a1106efc06490dde33 *man/imputationModel.Rd
bbcb6b092dd71f9dbdc2d27de783ffd2 *man/indepGaussianprior.Rd
4bc6545017e60d79044204bf2316fcf1 *man/indepGaussianpriorST.Rd
576ce64430017c19388f63125460e621 *man/inference.control.Rd
f2df6d2acf3018d9630dc704f9e7de0e *man/insert.Rd
d20ced24022410b67ddebb7771867d09 *man/invtransformweibull.Rd
d631c0b4aa5a118cf876da2161d75e9a *man/is.burnin.Rd
12b97af3724ac854343e04b2bf933f15 *man/is.retain.Rd
1a7a623aa256d9408ad7b8ca9e98b094 *man/iteration.Rd
c954640a579699eef539a4062dd3386d *man/logPosterior.Rd
154ebf52df0a27eda0a57871a6abd30f *man/logPosterior_SPDE.Rd
10208825b8fb63c11a39938a75ea353f *man/logPosterior_gridded.Rd
6c2e24c4f5caee31283d924c924c5332 *man/logPosterior_polygonal.Rd
e393ab732f0b7f240edc1de13aab1207 *man/loop.mcmc.Rd
b41bdbbfcf6e51ae462f674f471adb70 *man/makehamHaz.Rd
cf95787cc97a670da1c89369348b4f10 *man/maxlikparamPHsurv.Rd
31cfa39d420ea99ca07e69b66a1ee9f4 *man/mcmcLoop.Rd
4bd4adf60a06412e35bd92a4a1ce228b *man/mcmcPriors.Rd
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07e8ec9506e3744ee5b8da53adfcbc8d *man/mcmcProgressPrint.Rd
2b0e76667c7ca69c9a808dce2e3244f2 *man/mcmcProgressTextBar.Rd
998132f7d258d7ecf839154c02259c04 *man/mcmcpars.Rd
880c8baee3e53ac30ad4025de3fa19a8 *man/midpts.Rd
2ea236c26e96f15f0bdae25bbcf3aeb0 *man/multiWayHaz.Rd
03f12db7fc519a06dd4d4d0f848af5e7 *man/neighLocs.Rd
3fec003d4dbec130df5a63d9d7acb0b4 *man/neighOrder.Rd
cf6fea3e272a2a649932bc34e257b709 *man/nextStep.Rd
f6655646328664f7f48b0a132c12fd18 *man/omegapriorGauss.Rd
33cfdb58ec4922c0810b05c454f5898c *man/omegapriorGaussST.Rd
345eeab851b191b2ba2709990423c2ba *man/optifix.Rd
9094547d7c11430454809feca30cb162 *man/plot.FFTgrid.Rd
9005ca6cc6cf7eddbe8dc534457f87b7 *man/plotsurv.Rd
5f9726cc91568e5b606694f8c276f700 *man/polyadd.Rd
b9f6e58c41616da84116ff898123b452 *man/polymult.Rd
8610bb2131a0a318e993dcf9675753ac *man/posteriorcov.Rd
099d345601b46b690c9776bb0953daea *man/predict.mcmcspatsurv.Rd
d7eda8c66f1d33412411ff2515d07ee6 *man/print.mcmc.Rd
60de65997fc71cd93833a0034473d07d *man/print.mcmcspatsurv.Rd
346c363555c0d2558ba40089f0f5e62d *man/print.mlspatsurv.Rd
25d2b9815929fea0058464db57efdda2 *man/print.textSummary.Rd
58dfca2d51d3fcc95d5ad3f992be6777 *man/priorposterior.Rd
21fa0eef15c506151abe77742234c27b *man/proposalVariance.Rd
5c02cac8b59d27207e5ede4f9ca05e77 *man/proposalVariance_SPDE.Rd
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9a734c200a20937a1e85112584f47f0b *man/psplineprior.Rd
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62caf1a357f8d5902da3a693a3fa93cd *man/quantile.mlspatsurv.Rd
13537288327204ae7d7b40ad4e51f67c *man/randompars.Rd
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2cef5e1aea62733b2cd09dfa8aeaba1e *man/reconstruct.bs.coxph.Rd
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9ca413b9185961e5214da726a852873b *man/resetLoop.Rd
117bbace79d8c5fe44c515ade6e44629 *man/residuals.mcmcspatsurv.Rd
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3068374d5e4f5f27ba565efd631b03a3 *man/setupHazard.Rd
608058315a8594a875d1eda7c9ada6c8 *man/setupPrecMatStruct.Rd
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5863967a32d68f2a3c331abd3c29c4dc *man/simsurv.Rd
5c8ad5e5ffe2f3714ed41ce0ce761831 *man/spatialpars.Rd
c2b3b537e0d0474a16bb8e8b37867c94 *man/spatsurv-package.Rd
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6c016db1f9e42fc01cb63f648a2fe6b1 *man/spplot1.Rd
ca17f66cb9421015d80785e48b71d045 *man/spplot_compare.Rd
5e8fd3d3acba1fd549a4f28144685aae *man/summary.mcmc.Rd
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fab7bc3179bfc0efe9451cfa0babaaa8 *man/surv3d.Rd
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a7f75bef01a5a8b064f48e638d06f3f1 *man/survspat.Rd
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5a21d3723102ac0a27123f8a61a28471 *man/textSummary.Rd
0adff781ef12792c17b62362e2d9d5b7 *man/timevaryingPL.Rd
6f72dbd9c0fd2e1a7f0e0b5b68c7cb6b *man/tpowHaz.Rd
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8b35477e66b5e8788fc071fbda52e180 *man/urlTemplate.Rd
3f3b35a68724c6647e551f3414688e94 *man/vcov.mcmcspatsurv.Rd
9a6e0ce26ff02ff4b324dbc2f5a60992 *man/vcov.mlspatsurv.Rd
220d3ad91fd2f07683f745f62f1b4ada *man/weibullHaz.Rd
4a2c445eebb129886b49ebe29fc901dc *tests/iteratorTest.R
2f8d3e6fe9d9169cef1819e829399b06 *tests/test_QuadApprox.R
8cb0c7d03d8e84376c15a4227bed9050 *tests/test_sim_ana.R
b9f858ae09eefefdb0c4e25a7e56ae4a *tests/test_survspat.R
