45636a421a686cb899763046506a6ca4 *DESCRIPTION
602d2ad61c404bcbc9ace4b778fcf6bb *NAMESPACE
733763e984affa2fb206deb2b28e7a69 *NEWS.md
91dba897e9fa25a06dce3c76fe0397bd *R/args_classes.R
4a20857370665766c0898d6e4e9ee2c7 *R/imports.R
0185c5d18ae74aeeff81a8274cea733d *R/in_silico_population.R
7691aab1e0cbce37f1d5ae91dabed84d *R/in_silico_system.R
718cb100619225ebb7c45bb463e3d069 *R/julia_evaluators.R
54a56ee4556c2393c94611999a101c45 *R/stochastic_simulation.R
03d34514a42f9e6ff4525d137a51984d *R/zzz.R
817c3c157615a1c0e7b33a478af24431 *build/vignette.rds
ffb203dae272839e6b80457cb344b6fa *inst/doc/sismonr_vignette.R
1ab005f06690b9d8e70e648da8627e7c *inst/doc/sismonr_vignette.Rmd
ccfe6d3df1a1575c8dc9615f5e3da232 *inst/doc/sismonr_vignette.html
51db2ffa47988b6225bd858837ca456a *inst/julia/network.jl
5f9840700d91ae03102eb1750d4675ac *inst/julia/stochastic_model.jl
5a18df32afe4250e8b19d88ead45347d *inst/julia/stochastic_simulation.jl
daddb6d9b5649d544aeadf87160b2fd8 *inst/julia/testModules.jl
cfcb8cc94615c9b5c61f903ca2c7ad2f *man/addComplex.Rd
d4641b128a96873e4dadfb3be1d45334 *man/addEdge.Rd
ddb3465e8560769f023a00b33f72c221 *man/addGene.Rd
1aca1f322ed6b9897a76ffbd3057271d *man/callJuliaStochasticSimulation.Rd
75de0c1e2c052d26d7247076a8d97d35 *man/createEmptyMultiOmicNetwork.Rd
685a3726d50d69d4edf329b49cbcb4f8 *man/createGenes.Rd
b3854d2b424f2a13b29cc41120f4f642 *man/createInSilicoPopulation.Rd
3f32a5a35e2eae6fe5c079e72328aa9c *man/createInSilicoSystem.Rd
b3d4c88fbba24293135073d2eecdca1d *man/createIndividual.Rd
05cc5511bfa853b1c568da2072eb9f36 *man/createMultiOmicNetwork.Rd
152cbeb36ea478ff0b66747b50b1b5b4 *man/createRegulatoryNetwork.Rd
b8f2ecd0948375ec5b67401549f93132 *man/createStochSystem.Rd
36f39943f0db101f0dfb2ad8fb567a17 *man/createVariants.Rd
67ccbc777230062c9fba1e5e44da3f33 *man/df2list.Rd
8c831f1ba2c59dfb50ee5984dc843b3b *man/findJuliaNoError.Rd
6338496693d2a33dc8b831cb616e34e5 *man/getGRN.Rd
9041d35af0e1b5a3decae0f3fb3cbfc3 *man/getJuliaEvaluator.Rd
70325b4c17f21858be49317d6e1e2141 *man/getRNAseqMatrix.Rd
5ad71885f4289523865faaef54da051d *man/insilicoindividualargs.Rd
256d267934d6dee00bc05262d402b9d9 *man/insilicosystemargs.Rd
77cb375a7b784a43fbdf7ccae801924b *man/mergeAlleleAbundance.Rd
f7f14ac32996dc031fe1968941dd9222 *man/mergeComplexesAbundance.Rd
883ee02a4cd7f1a2379db5960b3a2fce *man/mergePTMAbundance.Rd
6ad398ca60c27a7007667384ee51e2ad *man/newJuliaEvaluator.Rd
dd1d56dd96872106076a1627d2e58cf0 *man/plotGRN.Rd
2804b2e5c8044e56dd250af1614ee3d3 *man/plotHeatMap.Rd
a5922b7ed1cfa01ee4b8a9e807cca963 *man/plotMutations.Rd
f310ab91451bb2da32ec89645158eebe *man/plotSimulation.Rd
0186284426fd4f0b49e01a9fbe706100 *man/removeComplex.Rd
e1639809fee334df9cf1002a6efdac21 *man/removeEdge.Rd
0254a7616beadfc375775998caa5a92f *man/removeJuliaEvaluator.Rd
550cd81d80a261fc480b305733119197 *man/sampleLibrarySize.Rd
de13673300ff84019a2a16713949d21b *man/simulateInSilicoSystem.Rd
85433412164f517a418db7f510595c88 *man/simulateParallelInSilicoSystem.Rd
6b788c5d5e6857d85ad28b054823e0cd *man/sortComponents.Rd
2d18992e7ea018686a0f49a05f490ddf *man/steadyStateAbundance.Rd
0ea66214b24a035e25eaec02e2bc1484 *man/summariseSimulation.Rd
1ba11d4a05dad1b540ec2a4fb5ad80db *tests/testthat.R
4c966794c431a44e00804f662863a9e6 *tests/testthat/test-args_classes.R
2e2fb4d7def10128e4fb0b273ab3f0e3 *tests/testthat/test-in_silico_population.R
97debbca19143a630f4227db6c89af2e *tests/testthat/test-in_silico_system.R
9794eeb63d6e922016d49fc2e5b4e20e *tests/testthat/test-julia_evaluators.R
da46297e5452363a610805be3bd5c8b3 *tests/testthat/test-stochastic_simulation.R
1ab005f06690b9d8e70e648da8627e7c *vignettes/sismonr_vignette.Rmd
