f6ff608c7ac91ab567816a55a9c7c172 *DESCRIPTION
2acdfb7b1fd26af250efd14332a781fb *NAMESPACE
08aa359052d7740b01d8709d03663af8 *R/1000G-package.r
73291800602e5b24ef50448d53db2660 *R/hapsim2-functions.R
3b0cdb8e7526740f31f9f00fc2b32d9f *R/readvcf.R
2f3434ea9afa35ba4efe38c1b68ee97c *R/recombination.R
edd6359b25642703e4da143dfac44caa *R/simulation.R
ac34871e33529a3abdcf12e30dde0a5e *R/writeped.R
8b423c1f0f4b110b1bb21f5f91811558 *README.md
c1f21c018866b1b7b94de247caa14845 *build/vignette.rds
c338b17c1db72a161b3eb955a95c3350 *inst/CITATION
5515108f7ebbae468824ef5d60f10ab3 *inst/datasets/README.txt
d586df9d06ae4b7f457241d4c8b349fa *inst/doc/Example1.R
516c5cb76f730eb2864d838005f0c669 *inst/doc/Example1.Rmd
fc24f4cb4430fd155cd7e8bcdc5f73ee *inst/doc/Example1.html
b4c88856effcf5b78e672a89b73c54e9 *inst/doc/SimulatingFamilyData.R
d99051ab6f1d86bd4e6f8d3aa526d8ff *inst/doc/SimulatingFamilyData.Rmd
c1a581bd99094eb53ec28c0664065c5b *inst/doc/SimulatingFamilyData.html
5dd9b251e2bcabb6f0a22ee0c342c959 *inst/doc/getting-started.html
ce9150836ccbf135ba764e33f487d6fa *inst/examples/20130606_g1k.ped
1f5eda9dce11a2581cd91484d15ba4f0 *inst/examples/amelia/start_sim_14Nov2017_2000_Apo.R
5763e0e3e9627cf6cb21781c8cb04090 *inst/examples/chr4-geneticmap.txt
f87f5d88050ef3a480d009ef29e8f663 *inst/examples/examine-maf-and-correlation.R
2f1813705347e4e90bbed8866e02aac9 *inst/examples/example1-single-population.R
93919efd2dfb558c78852be1f7f1ebc0 *inst/examples/example1x-single-population.R
f9517547f0ef88d96a93065db2f87bbd *inst/examples/example2-population-stratification.R
3d9c30659a001deef44fe38f9fed299a *inst/examples/example2-stratification-qqplots-and-summary.R
6d991161e769b3c52bf1f81a349990e0 *inst/examples/example4-population-stratification.R
c8215cc0973a7a35d423bb29763964d9 *inst/examples/extract-1000genomes-genes.R
fcee719ce2333233d91b99190e32df65 *inst/examples/extracting-vcf-files/read-and-subset-vcf.R
ea4355ebbd31f1b5b2552deca4377581 *inst/examples/generate-sim-cmds.R
246ee98823ae18075494f5ab38cc6b7c *inst/examples/plot1.R
2bc31988b3df7ef8356ec436f6736c4f *inst/examples/region-chr4-93-TMEM156.vcf.gz
c4c8b3f7eadb70fb5e2624b57ba8ea73 *inst/examples/region.vcf.gz
a8093e398ed6a62d0b6701663c748bc2 *inst/examples/sample_subset1.txt
2e665e7ee89c009e2187ef069f9070cb *inst/examples/sample_subset2.txt
1b4f9b8e1b133c4981e52dece6ffaa28 *inst/examples/timings.R
cc539f96ffe580f93ea0ac7ab3aa5a2a *man/SIM.Rd
eebaec50d25df207572c88b48ebd4379 *man/computePairIBD1.Rd
e47690f27b67bcaadc77af25daf221f6 *man/computePairIBD12.Rd
ef31f9b1b35312836210d3e4caea665e *man/computePairIBD2.Rd
625742a8270b4538f86d09b557dcfbb1 *man/createVCF.Rd
b39fca65f05c9f0540794c56d5f017e3 *man/crossoverCDFvector.Rd
68138de17496e7825e1929c2d22e37a6 *man/downloadGeneticMap.Rd
ea12426cea4d4172da65c1a298889f05 *man/generateChromosomeRecombinationPositions.Rd
68fd4002af7196e7fa238fe9a497a906 *man/generateFakeWholeGenomeGeneticMap.Rd
a56fd525382291fba0ccc0cebc588f10 *man/generateRecombinationDistances.Rd
259e27ed5826f01ee6af8f5ac713d467 *man/generateRecombinationDistances_noInterference.Rd
b9e4c7f5f7f084ced14ce2e344de6c95 *man/generateSingleRecombinationVector.Rd
3120ba375cd6a8d81aa2c94497dfffc2 *man/generateUniformGeneticMap.Rd
6ab7fbf330cad3a6156e705b48b74f16 *man/generateUnrelatedIndividuals.Rd
6fd1a711accac472d2d4bcda14e0810e *man/geneticMap.Rd
904dd410d9916535442ce39d489712ca *man/getCMfromBP.Rd
42d23417b66356ef2439574abea0f1ab *man/loadSimulation.Rd
24a5a84d712d1664827f7b54874a23c4 *man/newFamily3generations.Rd
ffbd4b90b2484005bb1e3cd7e911dba3 *man/newFamilyWithOffspring.Rd
34ca7d0c77fffbd40ac330fecae8fff6 *man/newNuclearFamily.Rd
c92641760dddafc823761296ea8e39d5 *man/pkg.opts.Rd
5668c05e1421b672b58f2b1aa7eb6526 *man/plotRegionalGeneticMap.Rd
ab8f19ec9479f62c5da76369e9fefa86 *man/printMatrix.Rd
26b514821cd85cc49594e9fe2511ae61 *man/readGeneticMap.Rd
58848bfd195c66a19b6f72e3e43d9c42 *man/readGeneticMapFromFile.Rd
5e2c44c048d9d7ff653119772544c654 *man/readVCF.Rd
952b3ebc28c889ab325c9a4954534693 *man/retrieveGenotypes.Rd
35e37a0ec5e0232855f21075e4c0a58f *man/saveSimulation.Rd
6bacb4bad990b8a040e28fbadfae4709 *man/setRecombinationModel.Rd
20e019ddf13322aaa4139429c3151123 *man/sim1000G-package.Rd
e8322e7ffcb49dd70ba6c31579d7fe56 *man/startSimulation.Rd
0663ba475f53f8ebf60fda75f269464e *man/subsetVCF.Rd
324f6983a81717ea632e3b9af28f118a *man/writePED.Rd
845973a039dd8dd70a79d3e8e4d27361 *tests/tests.R
12c2fbd81e99c220403c58c389c938a1 *tests/testthat.R
7fdd0247c3024f261f61372fc6f91268 *tests/testthat/test1.geneticmap.txt
2a482839dcf6c1d3e0e2b930a192c1bf *tests/testthat/test1.vcf.rdata
a596fe5d6dcd3938551b701e69d59689 *tests/testthat/test_2.R
516c5cb76f730eb2864d838005f0c669 *vignettes/Example1.Rmd
7229793ef9df63ec9aa0b095a48b6fcb *vignettes/Example1.nb.html
d99051ab6f1d86bd4e6f8d3aa526d8ff *vignettes/SimulatingFamilyData.Rmd
d41d8cd98f00b204e9800998ecf8427e *vignettes/region.vcf.gz
