30ba5c73b08d4fc80e2538b895449a43 *DESCRIPTION
62cff1c5f2056c3bca9c662864cfe2a0 *NAMESPACE
8d3d41c3815ae678bf9299f790ba6a82 *NEWS
c9ea3cf4be143eb2c02e44c3221c63dc *R/BARRIEL.R
32b62e53b737044422cf1748ef5eff40 *R/FIFTH.R
9bda2ca4612f5e7ba194a29b97489797 *R/FilterHaplo.R
51a19d76db87c905e95cea367cdff5cf *R/FindHaplo.R
e893dc699f837c34d101a1ca88a55d37 *R/GetHaplo.R
57e8718a3e8a3a45ea5bede0f7d7a51e *R/HapPerPop.R
38baccfd9cffd6662a76d496eba2110d *R/MCIC.R
01a22e3301b831a22f1cf515d7230192 *R/NINA.thr.R
386c77ec4738d99113169c669a80f781 *R/SIC.R
b775039de62fc020430d69ca564619f4 *R/assign.whole.taxo.R
8c0fe0f7fbea784faa6fe9ec088891ad *R/barcode.gap.R
42e98eb2c2c25da6cc255b75741aca50 *R/barcode.quality.R
8dcedf184dea978c8ed2f2ccd4d0a0a8 *R/barcode.summary.R
01224d521741b8d20259429cd408dfb5 *R/colour.scheme.R
3c8435fe923958534ff55eb6b921ea18 *R/compare.dist.R
0c241d9d86699c0dd49a34ea6a00ab71 *R/distance.comb.R
f807d65bcfd0d833c5c68a5960dcada8 *R/double.plot.R
57edad866c13c951b1ed6bd55afa2cc2 *R/filter.whole.taxo.R
70ee45931daa1a347884ca68a61971c2 *R/genbank.sp.names.r
59fbec430e02f83548560109b6877847 *R/get.majority.taxo.R
2223c4755c9c83299975c423e2a6433f *R/inter.intra.plot.R
efe0480ec8d7873e3d16f81b1592ecaf *R/mergeNodes.R
0293ccefa702c1950ba0664a9c92af77 *R/mutation.network.R
d8bebd7209562e3d18618b3044b09b60 *R/mutationSummary.R
5148056729d2ab5cbdeb6a84c2dc4f4e *R/nt.gap.comb.R
1b8a3d19920996302c975fb065873035 *R/perc.thr.R
9767182750cf3751997a384f81ec7d71 *R/pie.network.R
f258095c6a101e7d6805bc9dede81024 *R/pop.dist.R
b61fc38a8751b5a02ea21a4b48e63244 *R/rule.R
d9c8084e014aa64b276ae5fe7cf43f22 *R/simplify.network.R
cda9e68cc5e1beb51af82df445000fe9 *R/simuEvolution.R
1ec918649565a115ef1f032b30a9e32d *R/single.network.R
29550af4de89cc537223f28ee4d6856c *R/single.network.module.R
7190deab7b1885e9dc7109e93a7a430f *R/spatial.plot.R
613fdbc6708fe116f94faac7d84e792a *R/zero.thr.R
0025c657f919d683e9b58dbcd564aafc *build/partial.rdb
463ee712d3be151aecc85cafc1b0e2c5 *data/Example_Spatial.plot_Alignment.txt.gz
90572f506e5f52136c21fde7b8b1523d *data/ex_BLAST.rda
d0fe3215091811496faa765b2485dcd3 *data/ex_Coords.txt.gz
fd4026e3179f286c4fee5dada0f20740 *data/ex_alignment1.rda
4722ecccea854901c24aa9f139a8408b *inst/CITATION
bbcef4a50d3b4c297a3af50f92417cae *man/BARRIEL.Rd
a75382c82f2129992d9b2fda10137ddb *man/Example_Spatial.plot_Alignment.Rd
371f378711f62fc12183f68fafe77084 *man/FIFTH.Rd
fb57485105a7c2f2ab9d6a0907ca6b47 *man/FilterHaplo.Rd
b62d142c209d1f152ce99888bcdf28ec *man/FindHaplo.Rd
fb0cc62834839cb4c38c162c918e0214 *man/GetHaplo.Rd
852e66b6f220cefdbe4af1ef29d2b5e7 *man/HapPerPop.Rd
a826bcbbfc5122ddd3b49c67cdb4c417 *man/MCIC.Rd
d974c54c90b8928ac97e25a9efbd597f *man/NINA.thr.Rd
e860415b2ef032fd8709c45860f8aa92 *man/SIC.Rd
c3de02a90c9014d97700c35c713ff5e5 *man/alignExample.Rd
9e89ea375f98aa545cbd38a5171eff03 *man/assign.whole.taxo.Rd
8d758031024abd2db8217314c7e3b2b2 *man/barcode.gap.Rd
c4fe78bfaff8a9d40886b3d42bc6904d *man/barcode.quality.Rd
06331122f1f3d0dca644f658288c99ac *man/barcode.summary.Rd
746c2375712d577ef34b43a5786cd1c8 *man/colour.scheme.Rd
9843bebc871fe03770765ffc9eb63d04 *man/compare.dist.Rd
9c0ef3af4b5c2e00406d084a3466116d *man/distance.comb.Rd
6ac8dc352e0b7587d8bb3f51b028d564 *man/double.plot.Rd
ec10bfe01d31317da6a42970671a8870 *man/ex_BLAST.Rd
9fc4dc7e836289ce4f9a25fde1766c42 *man/ex_Coords.Rd
3a7c54ff93921c8c7c5e2b80a8775718 *man/ex_alignment1.Rd
1f3bf3c55f1dc671bf8f8cc238ea2ab7 *man/filter.whole.taxo.Rd
e6d8b4df645da3c61aabada1ddf4d73a *man/genbank.sp.names.Rd
e5860ef89d783e6c9aea4da35fd0552e *man/get.majority.taxo.Rd
10d438382936d939656934374c9dfbd8 *man/inter.intra.plot.Rd
59eadd53eaa3733acb219536deffa4fa *man/mergeNodes.Rd
8cd1ac0b032a359b128d5f58a6ce53d4 *man/mutation.network.Rd
eaec50ebba439a2bf760e3e17908f059 *man/mutationSummary.Rd
7ae2b9700b70988109fe97fced29f9d3 *man/nt.gap.comb.Rd
2a3a8ca13c3ed790277a83c86b914bb3 *man/perc.thr.Rd
c05dcf1807c4b81b37dc275081e7c5ae *man/pie.network.Rd
fd7a448788677c778118dfd2815ed896 *man/pop.dist.Rd
e27633935e3196f7a8a8c208963d8f0d *man/rule.Rd
5b68d9d6fe2fa7f048f74621305baa95 *man/sidier-package.Rd
738b3e8ae470ed69417af04c5cc94432 *man/simplify.network.Rd
99c01eac8c7afd4677e9441a3e3e4762 *man/simuEvolution.Rd
461a6ada16dec5ee05edd8ee05c17fae *man/single.network.Rd
3952b6879e4f3b195aec1e87e50ca56a *man/single.network.module.Rd
e45abeafd8cb7959257602ae62cb2629 *man/spatial.plot.Rd
e82e15d0802436911fb0f9bc150e58b2 *man/zero.thr.Rd
