d01a118e39f07aebf0e6f2c20480318b *ChangeLog
394734968fe0f9f8fb8518f52322d60b *DESCRIPTION
5dddedc37b0f792031695f083a52b3d8 *LICENSE
f2295e29799bdc51bcb5c1b4af8a7769 *NAMESPACE
22babc60249228174c1d90ee92e3e288 *R/seqminer.R
ead63d8258b0216faf323b1bdb44b338 *configure
5854d5b5e15c56c16a0b361a42150801 *configure.ac
1c96de0a2112c8f4cc6fbdb911a29912 *inst/doc/Manual.html
b94af6795e947307028d232aee84d501 *inst/rvtests/rvtest.MetaCov.assoc.gz
6ed4d335152649bfe88ce972d23440e5 *inst/rvtests/rvtest.MetaCov.assoc.gz.tbi
6e9beac74bc1ec51eeead95a58c2e57c *inst/rvtests/rvtest.MetaScore.assoc.anno.gz
543690c148fb9bccb7e8b3e05826f5f6 *inst/rvtests/rvtest.MetaScore.assoc.anno.gz.tbi
99237619851543e09bc2906e6a66c2d7 *inst/rvtests/rvtest.MetaSkew.assoc.gz
a2d22ed038bcdd63b2200f8a495ce0d8 *inst/rvtests/rvtest.MetaSkew.assoc.gz.tbi
9053a4d846251aa8123bebaaf4805153 *inst/tests/correct.Rdata
a62c71a0c80dc2e45380fbd559ff7601 *inst/tests/testthat.R
e95e6420f0b8bdf2306dc87628a2c9b5 *inst/vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz
8e1e8a6b0944b906b913d315aa4f8fe0 *inst/vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz.tbi
30b34178034c34db61e46eeaf01fe863 *inst/vcf/all.anno.filtered.extract.bcf.gz
da2e7fb5756f4e027cf076ddcdb5eade *inst/vcf/all.anno.filtered.extract.bcf.gz.bci
a30627f5fed64983816d94ff2f90369c *inst/vcf/all.anno.filtered.extract.vcf.gz
eebfb3d8260a7def9f29034931b7f9e2 *inst/vcf/all.anno.filtered.extract.vcf.gz.tbi
9cc4f5122bb2e3b0b6b519f8c00d4fd7 *inst/vcf/refFlat_hg19_6col.txt.gz
68da52e36193b458735d265e388691f9 *man/SeqMiner.Rd
d2d8212b6a802e19c2c9204b3f8fad8f *man/hasIndex.Rd
cc297752d2ecf2bc455e8eacd82d8565 *man/readVCFToListByGene.Rd
77721b5a7b2d8e20939e64e6d6dca2f2 *man/readVCFToListByRange.Rd
c9d4264ac702dcd474f1d9d0612d9a65 *man/readVCFToMatrixByGene.Rd
16105c3be61cb4032506657c38bc9e96 *man/readVCFToMatrixByRange.Rd
805ec995f81834df1a930516b2532d78 *man/rvmeta.readCovByRange.Rd
4e996a44ac349bc81a520c0d32a2b143 *man/rvmeta.readDataByGene.Rd
82ac356a1bf00b6f9f53554c52968c3a *man/rvmeta.readDataByRange.Rd
8b063bed9f1c2c3cfaa9b4b188425253 *man/rvmeta.readNullModel.Rd
382731f68ade8f7e9a1570627dd96e21 *man/rvmeta.readScoreByRange.Rd
27c1fe900cee5c752fe8031a36b3ad34 *man/rvmeta.readSkewByRange.Rd
4d808ce705f89ca8cbf45449df5beea2 *man/tabix.Rd
983f35a130ae6678ad73524aab8eb76e *man/tabix.read.header.Rd
5e23bb34d4893631b0b7facdb7165d99 *man/tabix.read.table.Rd
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a8302e38cecdde63fe299db71d42dd21 *src/BCFReader.h
f2dfc84a2dfd0290c2dc8d910bee0b53 *src/Exception.cpp
be9a7201c6ec40825118cd53f50f677f *src/Exception.h
7903b619ccd4afcfd4a24c2450ea8b20 *src/GeneLoader.cpp
54e44e25de3378d5c46a8c0330f56320 *src/GeneLoader.h
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7eefb9404550500c36612a2de43ba771 *src/PlinkInputFile.cpp
cea9d82e949f03b9094b3fa6c31c3df2 *src/PlinkInputFile.h
70bccc3a5d23fba307bccba4ae22060e *src/PlinkOutputFile.cpp
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369cd01f12020574e8ba158b20d20795 *src/R_CPP_interface.cpp
6d9fd499c364e05e131fbc495eb5c95d *src/R_CPP_interface.h
4fa82852c252afeb318a57e6382ac7ad *src/RangeList.cpp
67561bb3238cf4939e11519bb7928e82 *src/RangeList.h
387eb89d34fe3c3d18b2d93a734d582e *src/SimpleMatrix.cpp
ed89460fc7151a3bfc200b066c30ee23 *src/SimpleMatrix.h
db2f9ea5945e6c734eb1084e75be3f69 *src/TabixReader.h
8daf08291f0841ac552190e1271cd0d7 *src/TypeConversion.cpp
58477c57a019604a1fd2480597c377ca *src/TypeConversion.h
7e44626bee9969473c4970346f7693bb *src/Utils.cpp
392efa6e2a969fff2810b3ebbc5e0800 *src/Utils.h
354557b9450e958598141e4a1ca25425 *src/VCFBuffer.h
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ff41af0fa67d5e91ccc7d9b66986a9b3 *src/VCFIndividual.h
552321d7a3b6481df8133c33e0d5c104 *src/VCFInfo.cpp
9c67c0226efd1fa4abbf983e20755859 *src/VCFInfo.h
7426e4eed8bfca1d9bd83a9100e3dfd1 *src/VCFInputFile.cpp
465d0a0528782dea287bf8260e970bdf *src/VCFInputFile.h
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f847d5fd6668bec3c37e88f55d02e48f *src/VCFRecord.h
f847d5fd6668bec3c37e88f55d02e48f *src/VCFRecord_flymake.h
58c30e048f64b8bd851799393a7df1d5 *src/VCFUtil.cpp
e9e2d549f9cdaf5f06505e30fb64ef8e *src/VCFUtil.h
c99de6988f92eec0eb978e4298303d7d *src/VCFValue.h
ae3bbb54820e1d49fb90cbba222e973f *src/adler32.c
aba13a3883d7d117af33a6d8fe8c1ed1 *src/bam_endian.h
a6b6c0b958dfb0f0ff80d62c155edafa *src/bcf.c
613fc63007d9a00f264af2666fea9a04 *src/bcf.h
211ee67983ce33eb930c49e1266fcf23 *src/bcf_index.c
f0a41df6253eaf09e6140d3e10d1c351 *src/bcfutils.c
a9f135cf6c369a13d43510eaff9c983b *src/bedidx.c
071589f63cdc9bd9cbc9fb5902f63c59 *src/bgzf.c
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da5cc4b39d85aa5306d37b505915a9a7 *src/blocksort.c
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ece1cf781f240938187887bf2cee8dba *src/bz_internal_error.c
ddeb76cd34e791893c0f539fdab879bb *src/bzip2.LICENSE
dbe49534045bebcd393d3d0d5ccec28a *src/bzip2.README
3b20c77d5a678301ee42f57456108f47 *src/bzlib.c
433684bb4b14928660d748d3c65890a6 *src/bzlib.h
1bd8c561910cfe13a8a837f75d3dd223 *src/bzlib_private.h
6a0331bd872c8053af4bfa357fbd5415 *src/compress.c
5fbc88f708793e02b648d0fe48fbbe06 *src/config.h.in
1339c92938d2594a6eecfa21c374d1b6 *src/crc32.c
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0d9172e7f795bfa145a86c5dfa8edc8c *src/decompress.c
7d6b26389539ec2a96b9bd489af0d18f *src/deflate.c
a76eecb979102fa97ffb710f142ad2f9 *src/deflate.h
29d02cff161bde3e4e717b25a2ab7050 *src/gzclose.c
c2378bfb5d671b91030441266d2ecf45 *src/gzguts.h
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9142e7a574dfa1864856351937df8eaa *src/gzwrite.c
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4b7a7db0fc95f2cc50361545857a8550 *src/infback.c
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7fa3e91804601b6618c915b76a8dc332 *src/inffixed.h
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8f1b05cdf36a269882a955071b140162 *src/inflate.h
111edb79f982a014876b4a830372aed2 *src/inftrees.c
ec87be89b9bcca8ced80a70f857e823b *src/inftrees.h
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89e7b91e8dd04627d7ed7833322e8ce9 *src/kseq.h
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1fa3a687fb32f1dce8e7b5f11453398f *src/randtable.c
83b815e6e3ef2510cecf43b8f7ef4466 *src/rvMetaLoader.cpp
bf4d9afcf19e4f3246fdcebaeeafb666 *src/rvMetaLoader.h
bd0ada735ebc0423abae283bf1ef4dec *src/seqminer.c
9ea09d7361b319cb5e4ca2d752a70e9d *src/tabix.h
4e901cdc0ca684fd3d297bd1c100161e *src/tabixLoader.cpp
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6e800f6393b2d1f4129c437e250ff2a9 *src/tabix_index.c
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51fdcb3e2ccf60ca13c06920c89296a3 *src/trees.h
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53fc599227476643816a4a82f647e9cb *src/vcf.c
dbeab2c414080bf53c4723782c7c91dd *src/vcf2genoLoader.cpp
e7d01db88c60614c76e804c601770cca *src/vcf2genoLoader.h
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0b31d0c893d2f609cf5d5833e3c0b21f *src/zutil.h
07bb628557c4a50c4d8bc287701a9000 *tests/tests.R
