153ebe26d2c136f1a863a81356e6faa7 *ChangeLog
8a17308f981e3bae4011a59979482f18 *DESCRIPTION
e545d365365cb5e6cb4b8682a720497e *NAMESPACE
8775551bc89023f2cadda36fb70d7941 *R/seqminer.R
ddeb76cd34e791893c0f539fdab879bb *bzip2.LICENSE
dbe49534045bebcd393d3d0d5ccec28a *bzip2.README
92e80e3f2469def75b00dd990b6520a3 *configure
da98c73980ec691ae013c13c969283bf *configure.ac
1c96de0a2112c8f4cc6fbdb911a29912 *inst/doc/Manual.html
b94af6795e947307028d232aee84d501 *inst/rvtests/rvtest.MetaCov.assoc.gz
6ed4d335152649bfe88ce972d23440e5 *inst/rvtests/rvtest.MetaCov.assoc.gz.tbi
6e9beac74bc1ec51eeead95a58c2e57c *inst/rvtests/rvtest.MetaScore.assoc.anno.gz
543690c148fb9bccb7e8b3e05826f5f6 *inst/rvtests/rvtest.MetaScore.assoc.anno.gz.tbi
e95e6420f0b8bdf2306dc87628a2c9b5 *inst/vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz
8e1e8a6b0944b906b913d315aa4f8fe0 *inst/vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz.tbi
a30627f5fed64983816d94ff2f90369c *inst/vcf/all.anno.filtered.extract.vcf.gz
eebfb3d8260a7def9f29034931b7f9e2 *inst/vcf/all.anno.filtered.extract.vcf.gz.tbi
9cc4f5122bb2e3b0b6b519f8c00d4fd7 *inst/vcf/refFlat_hg19_6col.txt.gz
68da52e36193b458735d265e388691f9 *man/SeqMiner.Rd
2178fe184a0efca04249119bde3135e8 *man/hasIndex.Rd
86fa338d232fdae81f9695c7662b1e13 *man/readVCFToListByGene.Rd
d58981a9c9626886524a6c718e38f475 *man/readVCFToListByRange.Rd
c9d4264ac702dcd474f1d9d0612d9a65 *man/readVCFToMatrixByGene.Rd
16105c3be61cb4032506657c38bc9e96 *man/readVCFToMatrixByRange.Rd
805ec995f81834df1a930516b2532d78 *man/rvmeta.readCovByRange.Rd
4e996a44ac349bc81a520c0d32a2b143 *man/rvmeta.readDataByGene.Rd
82ac356a1bf00b6f9f53554c52968c3a *man/rvmeta.readDataByRange.Rd
382731f68ade8f7e9a1570627dd96e21 *man/rvmeta.readScoreByRange.Rd
30cefd09aa8aaf0e071275a26342a729 *man/tabix.Rd
f2dfc84a2dfd0290c2dc8d910bee0b53 *src/Exception.cpp
be9a7201c6ec40825118cd53f50f677f *src/Exception.h
b0992a7842a44632406b831952e2bae7 *src/GeneLoader.cpp
c9ef11f79be28ab575d1fe71c7059c2f *src/GeneLoader.h
2c67e2a01d43d65bb166661240e492a4 *src/IO.cpp
44d83f825e22802bc6c8b133b04807bb *src/IO.h
452538bf33dc4bb5bdfd912fa5c4d37c *src/Makevars.in
d41d8cd98f00b204e9800998ecf8427e *src/OrderedMap.cpp
6bab3154bbd8dc58c3ae5399df8eb232 *src/OrderedMap.h
a0cb740bd8ce684c99351d099e4bc26c *src/PatternMatch.cpp
93bd27513706852860b08f8add084e58 *src/PatternMatch.h
10a321be45f3709dc6e77da323e0bc98 *src/PeopleSet.cpp
cbc062a62e16c021f8f7595252018847 *src/PeopleSet.h
7eefb9404550500c36612a2de43ba771 *src/PlinkInputFile.cpp
cea9d82e949f03b9094b3fa6c31c3df2 *src/PlinkInputFile.h
70bccc3a5d23fba307bccba4ae22060e *src/PlinkOutputFile.cpp
2fe778ca0f36636899542ae319bf4da9 *src/PlinkOutputFile.h
4dd639af02ab3da1bb22b24d05febcc9 *src/R_CPP_interface.cpp
0acb0716e7b188fd1a543b338166c1a0 *src/R_CPP_interface.h
4ce2987bd3dbe946e5f74e84c5bc632d *src/RangeList.cpp
67c8bb8023fe8b3cfcf0bc6d795ec12d *src/RangeList.h
387eb89d34fe3c3d18b2d93a734d582e *src/SimpleMatrix.cpp
ed89460fc7151a3bfc200b066c30ee23 *src/SimpleMatrix.h
3abb6486e2b0cc03c5854430bbacdf5c *src/TabixReader.h
8daf08291f0841ac552190e1271cd0d7 *src/TypeConversion.cpp
58477c57a019604a1fd2480597c377ca *src/TypeConversion.h
7e44626bee9969473c4970346f7693bb *src/Utils.cpp
8bd4b0a3b18c889844ab4b49532f7c57 *src/Utils.h
1e917beac40230572aa04d79f137bad1 *src/VCFBuffer.h
6dd8895b1f308a6f48202f0f54ee7ad2 *src/VCFConstant.h
5b880d5d70e2740296963c2fa59b5428 *src/VCFExtractor.h
cd9af145da827e809947e0f915171e1b *src/VCFFilter.h
938cd6107b805c0c53c71202c14c9f02 *src/VCFFunction.h
117ba480aba2f66b889425ade7ff9d69 *src/VCFHeader.cpp
7e6931624f11fe9c3a4a5315ae16b080 *src/VCFHeader.h
47590e10745ed94857230e87700200db *src/VCFIndividual.cpp
ff41af0fa67d5e91ccc7d9b66986a9b3 *src/VCFIndividual.h
552321d7a3b6481df8133c33e0d5c104 *src/VCFInfo.cpp
1da0a696fd6611b44493ac4f710b7d87 *src/VCFInfo.h
0ca54f5c0208ad7a2832b61a21ac06b4 *src/VCFInputFile.cpp
1218948673a8d666ec6a01971ace09c2 *src/VCFInputFile.h
dc2fd142e35674a1b5acdc2045b64607 *src/VCFOutputFile.h
4a0dd3bde829fc6657bdcc75cbc5fb0a *src/VCFRecord.h
58c30e048f64b8bd851799393a7df1d5 *src/VCFUtil.cpp
e9e2d549f9cdaf5f06505e30fb64ef8e *src/VCFUtil.h
c99de6988f92eec0eb978e4298303d7d *src/VCFValue.h
ae3bbb54820e1d49fb90cbba222e973f *src/adler32.c
aba13a3883d7d117af33a6d8fe8c1ed1 *src/bam_endian.h
a9f135cf6c369a13d43510eaff9c983b *src/bedidx.c
a75f6ff6c1d77b74f3dbb01d1b54b389 *src/bgzf.c
0922d493e4b84f246c1eb9270e88c7dd *src/bgzf.h
da5cc4b39d85aa5306d37b505915a9a7 *src/blocksort.c
4472015145411b5144461cc251d259ea *src/bzCompress.c
ece1cf781f240938187887bf2cee8dba *src/bz_internal_error.c
74fa7a7ffdc511e1ef964332a27e05ab *src/bzlib.c
433684bb4b14928660d748d3c65890a6 *src/bzlib.h
423e3f753a9422952a24e8d85ab5da3f *src/bzlib_private.h
6a0331bd872c8053af4bfa357fbd5415 *src/compress.c
5fbc88f708793e02b648d0fe48fbbe06 *src/config.h.in
1339c92938d2594a6eecfa21c374d1b6 *src/crc32.c
f28d16b67efecdfafa0d816a7d982124 *src/crc32.h
c388b373b62850024f2a74fe6bf8db53 *src/crctable.c
0d9172e7f795bfa145a86c5dfa8edc8c *src/decompress.c
9b13d7661539c4d23a89d3d75d2170cb *src/deflate.c
a76eecb979102fa97ffb710f142ad2f9 *src/deflate.h
29d02cff161bde3e4e717b25a2ab7050 *src/gzclose.c
c2378bfb5d671b91030441266d2ecf45 *src/gzguts.h
b299fbea2ecb0ff33a0b3cf3c6b33f3e *src/gzlib.c
d0e145140eefec33fc546a32c7e4cc21 *src/gzread.c
9142e7a574dfa1864856351937df8eaa *src/gzwrite.c
ec0f167e71cef3db1679b8bb5d2426a8 *src/huffman.c
146c5fa95ec6304a38b33d2e0149f092 *src/index.c
4b7a7db0fc95f2cc50361545857a8550 *src/infback.c
acbe5c3d4bf679e6a41eed4569abfa93 *src/inffast.c
f3669099d3f571dbc0426401ed5f50e3 *src/inffast.h
7fa3e91804601b6618c915b76a8dc332 *src/inffixed.h
27d100516db4c9dcf46ae8cd2c98f803 *src/inflate.c
8f1b05cdf36a269882a955071b140162 *src/inflate.h
111edb79f982a014876b4a830372aed2 *src/inftrees.c
ec87be89b9bcca8ced80a70f857e823b *src/inftrees.h
48cd8fc534ffa1468ad3a66fcf280712 *src/khash.h
9ea63cefa7d19cd57d52f41b756cd052 *src/kseq.h
5fbd36095602ed2fd64556d5f4da27f5 *src/ksort.h
002183a8bd7985f13aeed46440503c1d *src/kstring.c
b22824b2f9f72abb22fa6c24ac74583b *src/kstring.h
1fa3a687fb32f1dce8e7b5f11453398f *src/randtable.c
ed238881360eb561411373e48a23c1f2 *src/rvMetaLoader.cpp
1652c2f4d6ab6f9180ac08c84d1f76ba *src/rvMetaLoader.h
6547530546cff3244357ea9bc96c0378 *src/seqminer.c
9ea09d7361b319cb5e4ca2d752a70e9d *src/tabix.h
93723cd9395369ca461baf0c98b732f6 *src/tabixLoader.cpp
f8bafb87ecd2ea4f76854eb19cf51c9e *src/tabixLoader.h
1cb01bcc5130eb867b23d6cc38745b4a *src/trees.c
51fdcb3e2ccf60ca13c06920c89296a3 *src/trees.h
e62eee8757fecfc2cfbf2dda8956097e *src/uncompr.c
8bad3f6aea1cceb783a39a3044b7b255 *src/vcf2genoLoader.cpp
e7d01db88c60614c76e804c601770cca *src/vcf2genoLoader.h
ae0ff652c3313d1b5cb7e5e45febd0cc *src/zconf.h
f454cab418099da4ed65aec38bc0db80 *src/zlib.h
e254a40578ee9bf35e7d7184cc658fb6 *src/zutil.c
0b31d0c893d2f609cf5d5833e3c0b21f *src/zutil.h
ccc42ea7b6bc1e05c99ab5871dad4a37 *tests/tests.R
