e2d9d5e75bb4c4cd9e2da32fac23f64b *DESCRIPTION
855232a567be24da58d88760c3d1fc5e *NAMESPACE
b2fde5e5467852bc184b35fb835d7cfc *R/BayesCptCI.R
4e5c2e30536a246c7c63857581165d01 *R/CombineCaseControlC.R
d738d2c16dc7d51c9853f3220c7360fb *R/CombineReadsAcrossRuns.R
40cd0c082bb8248dee113a884855f34a *R/ScanBIC.R
b4ef65af50ef6e8bd68b2184f1ac9298 *R/ScanCBS.R
176681f63f2d141bb1d872728d3fa1b0 *R/ScanCBSPlot.R
2e61fe9296eaa58004ec7ad2919932fc *R/ScanCBSSimPlot.R
dcd423e843fc0f54ef47df4b830e4b8a *R/ScanIterateGrid.R
a1720cc73dcb4c40cadd0f15ee82d9ff *R/ScanStatNewComp.R
bc9e839aae8ca45d26e4765b763dc94c *R/ScanStatRefineComp.R
97b06a27ad837c2f93329897f02d9301 *R/SegSeqResProcess.R
8216b1945ea89356d2960128407c2c4c *R/getAutoGridSize.R
a6583f994e90168868099d1d8f1b062e *R/getCountsInWindow.R
f6406872342adb8326c8e99cb8862777 *R/hppSimulate.R
37298238306ff52de7cd53dd4d8ca569 *R/nhppRateEstimate.R
52679f3de90798aa38a4940e4c8cc456 *R/nhppSimConstWindowAnalysis.R
fc6dc4d8a4db8df9902801cd878a2b5f *R/nhppSimConstWindowGen.R
c60790aae1486a1ee8d9065140550fb9 *R/nhppSimulate.R
c7e03ca57d50fa30dff75061691c8b12 *R/nhppSpike.R
278b4b2909da029b440f43fddb80c9b6 *R/nhppSpikeConstWindow.R
69d149acefb5304a0a5eb7441b47cf3b *R/readInput.R
00575734da7df66e82c6dbcb49389b59 *R/readListInputFile.R
7d80cce5e9929332c169c05e61214630 *R/readSeq.R
dca427da97c63b840cfce5d0c2de802a *R/readSeqChiang.R
6fe4b47fd2160fbb905d17f151620f5f *R/readSeqELANDPaired.R
00a79e7ba483d21eed7021e2f1afe593 *R/relCNComp.R
a0bdf83f044653b2a80ae75cef354c8e *R/zz.R
eca80bed897ca04fa076a6c7be1f4a3e *data/JSSim_Meta.txt.gz
dddaadbabd500900e0e432d875ac5297 *data/JSSim_NormalSim1.txt.xz
a8a9f8215b1782c1aa25e4c644a21fd1 *data/JSSim_NormalSim2.txt.xz
f8ef36b3aa8602518209f2da20e61181 *data/JSSim_SpikeMat.txt.gz
7d9f224d99d26abfcc46d0e9c2340af5 *data/JSSim_TumorSim1.txt.xz
2be3284bb6ca1d7c6b7bbb8f607fbe86 *data/JSSim_TumorSim2.txt.xz
05571b821ca854938dae7ed8cc08b049 *man/BayesCptCI.Rd
a9faad02a0dd24b048741947b272b2c4 *man/CombineCaseControlC.Rd
a7f136ca2925b36ff10821925aa0b8a7 *man/CombineReadsAcrossRuns.Rd
c902c11794c5f23f76005678a4a6aab6 *man/JSSim_Meta.Rd
1bec501b1fc84ba0d08db494ed9040e9 *man/JSSim_NormalSim1.Rd
0bbdcdbced781a580c06fe6f09900dff *man/JSSim_NormalSim2.Rd
1c3da88c84222a45b1496e5f6b905537 *man/JSSim_SpikeMat.Rd
4f1465ee4dfa222c87e0f266d1cc1d75 *man/JSSim_TumorSim1.Rd
bf84a2ec1e79a25063fc37f1ca55e23e *man/JSSim_TumorSim2.Rd
b1715f3ad422a650bca24043cb60d499 *man/ScanBIC.Rd
417568db4f188993f7680517d33eca2f *man/ScanCBS.Rd
9a703b8bcb002eaecc72e8b1fca643b9 *man/ScanCBSPlot.Rd
7c5374f7bcde81b3220b576973e77a4b *man/ScanCBSSimPlot.Rd
c0f66fc93b2bc1a80c600fe91688bd87 *man/ScanIterateGrid.Rd
ca7b3dc447e0509abce50afa3486d39f *man/ScanStatNewComp.Rd
1a4d94a801641a9399bdd6484197dd65 *man/ScanStatRefineComp.Rd
4bdfb3e8f412dddb5ab251a798b94e94 *man/SegSeqResProcess.Rd
3a890eda36fba631d343e6688a2f9d94 *man/getAutoGridSize.Rd
1a9a601300a8795cb7679b03c5244c4d *man/getCountsInWindow.Rd
39e7651a8efdd5f1070e3774c7a96374 *man/hppSimulate.Rd
9bb13c2b6d4821ca9720f8aaab5dabac *man/nhppRateEstimate.Rd
c9275b84afe8ef5a587f3f27e20fee7c *man/nhppSimConstWindowAnalysis.Rd
b81d19ca081c4990e64c333c760d9f80 *man/nhppSimConstWindowGen.Rd
a40d83865d5aba2f220216c71803f81c *man/nhppSimulate.Rd
aad2f8c7785fdda05115b168d778ec80 *man/nhppSpike.Rd
ba20053b842196539735e4d1238e93eb *man/nhppSpikeConstWindow.Rd
e4d17461a30dedfe63363218f5251f39 *man/readInput.Rd
2e8642a5ba20432028ad5a6d9ba526f5 *man/readListInputFile.Rd
0ad467abe0646e340f0df0e7b1353a45 *man/readSeq.Rd
7e1c4e95fd37460850d2d505379ccd7c *man/readSeqChiang.Rd
1d4b69cf4364093fdc4d5bf5166dd541 *man/readSeqELANDPaired.Rd
e5fead86f7bc3dd699aa17b880147775 *man/relCNComp.Rd
ab5b61650c54fd53cf0ebd25336fd4c1 *man/seqCBS-package.Rd
19a896e850f1db84286fa2d12507bdfd *src/seqCBS.c
