9f212e112f5279dcca83907893516b78 *DESCRIPTION
534feec2827f351dbeafb4ee0d25795c *NAMESPACE
3aca02c08606df5bfc2111bc23333448 *NEWS.md
bfaabf9746457b76082d9f335b1af8af *R/check.R
7fd7dd505955133a8bec173ea4a497ef *R/cross-val.R
0013f624f707a5268d636c2996aae7f7 *R/crs.R
d74dbc7908aab5e346c5a4229a30afeb *R/data.R
f4b9993a256e11ed3e9e35f9cefdc2a0 *R/deprecated.R
b6f2fb17fb001f1e2705c4cdd31fe194 *R/dharma.R
c7bc5130c4c3e082b4def12368ce8066 *R/emmeans.R
7c3f0c7d7f4f0d5aea7625c10ea600bf *R/enum.R
b1331bcc7647edb8000db7337d9e9717 *R/extra-optimization.R
97b98b3dc7ca8b02d6f8c7fb28500a72 *R/families.R
5f061b0ab4ba6a355da392facd0a47c6 *R/fit.R
8070196db8bc36fe9bbe5ce3c17b497f *R/gather-spread.R
c1e191f8add75c0a3b922fc665ebb91c *R/get-index-sims.R
8db51d1417f1ee7415ea7943a6741e02 *R/index.R
32b529a35327aade4d0e1b9c7969fff1 *R/mesh.R
f4952a44dffbce45606f85dbd058a4f6 *R/methods.R
55e3401c7b8fc9e74fe891e650f93fe6 *R/plot-pc-matern.R
0f6d1122733f855a326261740dc2a8d9 *R/plot.R
0018bf495e8d4b84361d89e96e79e522 *R/predict.R
d914e421af7ac71f35d5fceb4111fc08 *R/print.R
d2e7fe430c7a8e6a911fe1065a9f6772 *R/priors.R
06637a88bd1be1107e5a67480e31d14d *R/residuals.R
1ee7b65dfc64913e2612a888c794a903 *R/smoothers.R
e0b29d3c1b6fa905bbcd3887d1464e7f *R/stacking.R
acd05a75fe04fc4b2a8833cd630a879a *R/tidy.R
9786b08aa2d26abc16d18e7000fb4b27 *R/tmb-sim.R
061d1d88b9b7eae31eb9f121047770a2 *R/utils.R
fc40421cfaa43a23b13d0c9553b4fbce *R/visreg.R
b8769d33f7b07fdb4e845f32de28f685 *R/zzz.R
f61db891eb928123aba4412ca322f508 *build/partial.rdb
b352a962ca94f1c221a92aca8fdb2d71 *build/vignette.rds
6673f59ffcad0c4792b6c0a5ca5a12de *data/dogfish.rda
661dce1e1e9366b711357e7761a1f015 *data/hbll_s_grid.rda
00054dd3f19cfd2ce49fc85de0818346 *data/pcod.rda
1a6d8e7c21acaacf314fbe619b3736a1 *data/pcod_2011.rda
b85bdf8d06dd5a82fed6a3d1a1c711a6 *data/pcod_mesh_2011.rda
466ac3b8b26a6d1037d9ccfca4c9eb23 *data/qcs_grid.rda
3274b65624db7dd1d84c4a2c94a9a5fd *data/wcvi_grid.rda
f74fd943ca806c793b27a39da246a789 *data/yelloweye.rda
26c0a4303766b2274e37e55380cd5bed *inst/CITATION
a77bf8e8bedd3dffb51716ddd1f3abd9 *inst/COPYRIGHTS
ae1c943c9c68bde805555958bcc5b129 *inst/WORDLIST
8f34fe6ecb80a9f73091d9d5d33b7964 *inst/doc/model-description.R
9ed65f536167d0fc970a869e0c5cb6bb *inst/doc/model-description.Rmd
14f7a37657ca83e4b0cf764efdef99ff *inst/doc/model-description.html
8f6fd728a800dadba5b101c02ba6ca71 *man/Effect.sdmTMB.Rd
15694d060d6532565216600151806a2a *man/add_barrier_mesh.Rd
b7334ae4940d3cfb60a09d8be5b9400a *man/add_utm_columns.Rd
97521c8682cd89bfff65598282bba408 *man/dharma_residuals.Rd
b5f79944e1508b5d3b3dde0e46f0d171 *man/emmeans.sdmTMB.Rd
605d32861d8268498eb08d32c21c5f8a *man/extract_mcmc.Rd
1fc80c84126f34fe11d5e08c36dfce87 *man/families.Rd
f660e830f8dd2639985d6b148a5c72cf *man/figures/README-inla-mesh-1.png
72f70301d2431438d2f42a8d9903ee27 *man/figures/README-plot-cog-1.png
3e5171d8440f53677acf1ca35ac731ee *man/figures/README-plot-dharma-1.png
ee2903382b228a9089d8b4a5fce1ad8b *man/figures/README-plot-ggpredict-link-1.png
3f0c2fb9ebe8a29baed3fd88c8d86353 *man/figures/README-plot-index-1.png
ebb56940b2ee56579b4722d351e6ad4f *man/figures/README-plot-mvn-1.png
69dc7f65208c3f04b79ef4e1a6cde883 *man/figures/README-plot-pc-matern-1.png
cd81ea94e05e971ccd612c8b02b4efc4 *man/figures/README-plot-pred-mvn-1.png
03cf874af1f466ec532820bf9a167e14 *man/figures/README-plot-predictions-1.png
572d0031eee874e9aa799d53a7c71b5b *man/figures/README-plot-quant-resid-1.png
31b41a50bd4e89eab74e87874697e9e4 *man/figures/README-plot-sim-dat-1.png
dab5d616c943386964e7b610399298ab *man/figures/README-plot-smooth-1.png
213efa4ee97101b4b8ab1fe4e25cf713 *man/figures/README-plot-visreg-link-1.png
8f695ac73d9f6dff3a69b6ad03fa5585 *man/figures/README-plot-visreg-response-1.png
14722d9fc39884c776f466acec8494d0 *man/figures/README-plot-zeta-1.png
cb1e46f469cfbbbde29c8b5113e1d789 *man/figures/lifecycle-archived.svg
c0d2e5a54f1fa4ff02bf9533079dd1f7 *man/figures/lifecycle-defunct.svg
a1b8c987c676c16af790f563f96cbb1f *man/figures/lifecycle-deprecated.svg
c3978703d8f40f2679795335715e98f4 *man/figures/lifecycle-experimental.svg
952b59dc07b171b97d5d982924244f61 *man/figures/lifecycle-maturing.svg
27b879bf3677ea76e3991d56ab324081 *man/figures/lifecycle-questioning.svg
53b3f893324260b737b3c46ed2a0e643 *man/figures/lifecycle-stable.svg
1c1fe7a759b86dc6dbcbe7797ab8246c *man/figures/lifecycle-superseded.svg
483211232b93e2cd662b1c7d422fe899 *man/figures/logo-sdmTMB.png
53fc3bf2125b34945971b1dcc853c627 *man/gather_sims.Rd
02a88b088ac400c771a98fce53249032 *man/get_index.Rd
a9ee76a0b6268804381fc4ed56d84a8a *man/get_index_sims.Rd
20e75d535317dd8f913b720a3cf9b2a2 *man/get_pars.Rd
9ec2b05338e003055bb62174b4a94057 *man/ggplot2_installed.Rd
24f6985e86c9a4bc4d05fd8d10dc55ba *man/make_mesh.Rd
57c644160e0539fd22b90bcd78564b9a *man/plot_anisotropy.Rd
2613b0716101f56af9700ec2bbe7bdb9 *man/plot_pc_matern.Rd
5c0e03c417045f70cdb3a130d2ef88f6 *man/plot_smooth.Rd
2984769b3ddc0ab5a45b9b47309df84d *man/predict.sdmTMB.Rd
1213470792eb55d9533dcb3572dcbb8c *man/priors.Rd
d749e850447ef3e2cb1d8e98d7c91319 *man/reexports.Rd
08bd6503155bcac0a9431c940a418171 *man/replicate_df.Rd
5a7b5e6d04cc89a0ba5f32f6e4f01b85 *man/residuals.sdmTMB.Rd
2bf4de5d5addf5fc9a5ba6aa84f3a524 *man/run_extra_optimization.Rd
27e307988a55ceceb4de1fa01c2bd525 *man/sanity.Rd
ee64a0e0d03f51ceeafb06c075cc7666 *man/sdmTMB.Rd
07166a2b26796d6664c9231ca7aef1b0 *man/sdmTMB_cv.Rd
e49af92f35de202a270d9108a7ab3f60 *man/sdmTMB_simulate.Rd
0eed6e8fd89e08b07355b05cf1c89627 *man/sdmTMB_stacking.Rd
1bc2ec8f5d05051ffbc6bcad829c85a7 *man/sdmTMBcontrol.Rd
384a81ea196ca7dab60f69f43a86069a *man/set_delta_model.Rd
38366618dacd9336f1a142374f6dcf97 *man/simulate.sdmTMB.Rd
a9fdc88d125df01919a62d9f2dd74f8b *man/surveydata.Rd
94e4a6de33eb827e80d596c96246d9f3 *man/tidy.sdmTMB.Rd
92cd0f5c69314349ab3fe22182d702c8 *man/visreg_delta.Rd
d4ef7a133844e79cd6731af11bc0051c *src/Makevars
6b50033b1a69efe1f6ab82d915e2e77c *src/sdmTMB.cpp
b5917b03e91c863e3c89bc701031eaa7 *src/utils.h
3a427a51e53b4c6589756f495117588c *tests/testthat.R
fa17add1d0b4f3171c54370a64c79dfd *tests/testthat/Rplots.pdf
7d21ccbf6d7a2f9de3f2137deee4afe6 *tests/testthat/test-1-fit-basic.R
0e7eeb30b66d81b279bcbd12b5549425 *tests/testthat/test-1-visreg.R
978da3721bacaea5f36b30d85c76f490 *tests/testthat/test-2-fit-less-basic.R
a91811b44d2784efab0b837b3f9a01e8 *tests/testthat/test-2-print-anisotropy.R
5935805c39cf98095cf93c8f3ca67920 *tests/testthat/test-3-families.R
dda48f7b38b5debb6d8c13626a433348 *tests/testthat/test-3-spatial-varying.R
a17055aa974ef9c0ef7cafc5fb8f78c9 *tests/testthat/test-4-index-calculation.R
9157d1a314f97fcb4d288ee844b0892a *tests/testthat/test-5-residuals.R
6ab5741eda1a610f6357e62847979cd2 *tests/testthat/test-6-tmb-simulation.R
48d8860d1834773d6b9f635e39118147 *tests/testthat/test-8-delta2.R
0870d7e92ff3f5aaed50dd014d7342e7 *tests/testthat/test-9-mvn-simulation.R
e3afea9d31ae421c18069ab6a3896f58 *tests/testthat/test-aniso-plots.R
1cfd8350ce49ec548789e9a3465aa54b *tests/testthat/test-cross-validation.R
52fae45e33d27b65d8014041d3312e5c *tests/testthat/test-delta-population-predictions.R
5f555f378227d725912fe454b9c960e3 *tests/testthat/test-delta.R
79507658c0ae66193c2c87018da7b3ab *tests/testthat/test-deprecated-args.R
b71e342dfde6a0d51999074d86bd56a1 *tests/testthat/test-dharma.R
ff9ca912341af078f4b20a87f42d2b3b *tests/testthat/test-extra-optimization.R
6f34cfeba2bcdf04588cfc346a67a916 *tests/testthat/test-extra-time.R
aae21631601776e14af2bfbe5a658c95 *tests/testthat/test-factor-levels.R
7f4bc5745460fd78bfd637ce3aa0452e *tests/testthat/test-forecasting.R
b2966e4079a461e292cd96a3545db969 *tests/testthat/test-ggeffect.R
a4f7f7bdbe5467870173ab668b3c2579 *tests/testthat/test-index.R
eb6de9d3bcd90f99d8ccb7011fe529fe *tests/testthat/test-link-prediction.R
4153e4c9e0ad251c013136f1c48c029e *tests/testthat/test-links.R
c39b1f9bb5b9511baac61f1c888d707d *tests/testthat/test-mcmc-resid.R
70277af957ef4811b9a9ddd4421573d8 *tests/testthat/test-methods.R
ade9264e283214f717e429e86540e81e *tests/testthat/test-mix.R
6322ca067b3f45d056667a78e33bff88 *tests/testthat/test-nonstationary.R
31b706165853695a66da1dafee5d8210 *tests/testthat/test-offset.R
641fea0a3c2e899d0db1ef3397078a65 *tests/testthat/test-parameter-bounds.R
9ba35d0198d884f42b5d31595b0769e6 *tests/testthat/test-plots.R
0d74c4c2aaa089c1e6f30c09f1b45e1d *tests/testthat/test-prediction-missing-years.R
df51fd5d6aea079986d0af7c6e707402 *tests/testthat/test-priors.R
5489bfe09a7af14ce3a2d5f7edce16ae *tests/testthat/test-random-intercepts.R
ac418ff296b4dac19c3771cc9e8f143a *tests/testthat/test-reml.R
5a36e07b4b67b5344b10c0f796dc7419 *tests/testthat/test-sanity.R
e2e55cd53c4aabb3663beae82806bb61 *tests/testthat/test-sdmTMB-simulate.R
5feb5756c9659e4e15ebbf92ac3f4ea2 *tests/testthat/test-share-range.R
41c27a883844c63e66c4d2ea875b381c *tests/testthat/test-smooths.R
033dcebb59c3019375d7f37ffbeaba55 *tests/testthat/test-threshold-models.R
887ba6dadbe12b67629c45591159727f *tests/testthat/test-tidy.R
5975b8a1b8dfa63a20dbeabedce69e81 *tests/testthat/test-time-varying.R
b9b933499b4f07adcd707be09cf68e07 *tests/testthat/test-tinyVAST.R
db94cee6af465e4a29e6665e303627c0 *tests/testthat/test-tmb-simulation.R
a365a1c8c721ba010e8bec36b3197ba4 *tests/testthat/test-utm-conversions.R
b7510d1064c6f3fc117c7d7e2737f65c *tests/testthat/test-varying-epsilon.R
88ae49c3a1639d1aa031a478784d8fa6 *tests/testthat/test-without-spatial.R
52c5c33bd22ba6769eb689414a8e62e4 *vignettes/mee.csl
9ed65f536167d0fc970a869e0c5cb6bb *vignettes/model-description.Rmd
54b789264eb31ed1bab4171bbaf661c8 *vignettes/refs.bib
