Package: sctransform
Type: Package
Title: Variance Stabilizing Transformations for Single Cell UMI Data
Version: 0.3
Authors@R: person(given = 'Christoph', family = 'Hafemeister', email = 'christoph.hafemeister@nyu.edu', role = c('aut', 'cre'), comment = c(ORCID = '0000-0001-6365-8254'))
Description: A normalization method for single-cell UMI count data using a 
  variance stabilizing transformation. The transformation is based on a 
  negative binomial regression model with regularized parameters. As part of the
  same regression framework, this package also provides functions for
  batch correction, and data correction. See Hafemeister and Satija 2019 
  <doi:10.1186/s13059-019-1874-1> for more details.
URL: https://github.com/ChristophH/sctransform
BugReports: https://github.com/ChristophH/sctransform/issues
License: GPL-3 | file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.0.2)
Imports: MASS, Matrix, methods, future.apply, future, ggplot2,
        reshape2, gridExtra
LinkingTo: Rcpp (>= 0.11.0), RcppEigen
Suggests: irlba, testthat, knitr
Enhances: speedglm, glmGamPoi
RoxygenNote: 7.1.1
NeedsCompilation: yes
Packaged: 2020-09-19 20:09:45 UTC; christoph
Author: Christoph Hafemeister [aut, cre]
    (<https://orcid.org/0000-0001-6365-8254>)
Maintainer: Christoph Hafemeister <christoph.hafemeister@nyu.edu>
Repository: CRAN
Date/Publication: 2020-09-20 14:40:02 UTC
