15a7cd1c1303f9e28097b770e1161ce5 *DESCRIPTION
93bf6bde07605d81a6ea71dcfc8820cb *NAMESPACE
23765520192336f7de663f830c6eea69 *R/RcppExports.R
81c4541ee9458f48735758598824eeea *R/convert_gn.R
160a25856d36f34bed12fed9847066f7 *R/data.R
962ec82e767ec798880cccbfa0f89f2a *R/determine_ranks_tucker.R
7e11f1c2d0d3327b01950b3c70655160 *R/form_tensor.R
80f84246de2a80926a6d60fbf023ea8d *R/get_LR_interact.R
f644e67ffef94395a1209fade48f164d *R/get_meta_associations.R
61b32c95304dedc027c046684909fed5 *R/get_prop_associations.R
88c022124c6ce894791bad6543fbc92e *R/manage_container.R
22c846f15148ce9849809c33f67503d9 *R/manage_scMinimal.R
0e4ef258c3485b537f3092e130a35bc3 *R/plot_tucker.R
90244c3922c8fdc30ea9b5ce601766dd *R/run_custom_tucker.R
463bea254d5dbec9a23e35dcf3f58167 *R/run_gsea.R
e0f3d5cc682e8067994ad8e90f147577 *R/run_jackstraw.R
6d39e71fb1fb95daf3a7af92b3824df5 *R/run_tucker_ica.R
4c0fa14f7c1de09ada8a168566c78ec8 *R/test_stability.R
c3e36d6679848af4d4612fcc997d07e8 *README.md
7f48d6c399950ebc679e9d37909a52bc *data/test_container.RData
b8577acaa13055d8622ea97490749b78 *inst/scITD_logo.png
d02de5f65765dd2af366631882472ab8 *man/apply_combat.Rd
7711499e5b42e52eaf146fb70fa61b99 *man/calculate_fiber_fstats.Rd
f581ce140955fb2d59137de20f729998 *man/check_rec_pres.Rd
4a7db2e172fb381a3dc959c732321d7a *man/clean_data.Rd
7ad5b1733e046259cda57ff47f089d2e *man/colMeanVars.Rd
8e484c594e7ba616559de138c0b33e0d *man/compare_decompositions.Rd
9fa4d0308712ca6a099e5687a017cfbd *man/compute_LR_interact.Rd
93b77863116f627d62629394856363f9 *man/compute_associations.Rd
03952ef16379636d5164bd5c01a37e9a *man/compute_donor_props.Rd
2c90b5cde6c2f643ac09f79a448c7bd4 *man/convert_gn.Rd
9dd67165dadfd946c76b12a3f3274de7 *man/determine_ranks_tucker.Rd
13d0b26a06b12ed5ce552a0949f6fb91 *man/form_tensor.Rd
baf78e2924b9644e1e3ee5ad50811598 *man/get_all_lds_factor_plots.Rd
0d024c55233fe4b83830d0633227ff1d *man/get_callouts_annot.Rd
4905dc46f5ade52f6a409aa778380523 *man/get_ctype_exp_var.Rd
8811c7f95dd4eea5786d21d719ee9ecb *man/get_ctype_prop_associations.Rd
44c933621eea270ae4bf241167d6679a *man/get_ctype_subc_prop_associations.Rd
d04c9cab57ee3af3c6a6c6d67d5c3faf *man/get_ctype_vargenes.Rd
0acfa69586ae0d7e35760aab69adc1e6 *man/get_donor_meta.Rd
70ed6e34d70140c9c306a544ca4d53c8 *man/get_factor_exp_var.Rd
09eedd9e91b0b72e93454a46162b0e7a *man/get_fstats_pvals.Rd
f464c960454611d3d37e4a6510ae7a22 *man/get_gene_modules.Rd
fda38d445ab5ca2aa6c7404718628977 *man/get_gene_set_vectors.Rd
26fa3aaf02f1338eccf32faed36bf96e *man/get_indv_subtype_associations.Rd
8d40b3ac896ba603daafe5d8a5265c7e *man/get_intersecting_pathways.Rd
0e81c968fcb3513d160a32ad9ace1e43 *man/get_leading_edge_genes.Rd
503730ff0c45c5c8b2e553d5cabf7b1b *man/get_lm_pvals.Rd
b2d3559c64ff35fb8c4a3688e8be05ae *man/get_max_correlations.Rd
4e67b3139423be5be2771e0781ce9e1b *man/get_meta_associations.Rd
e3cf74e8cb76edc1a83875988b466190 *man/get_min_sig_genes.Rd
cf3af35aa76a228e2e2378fc1594de57 *man/get_module_enr.Rd
9fc1dcfbf1b276586f7d6f5548587509 *man/get_normalized_variance.Rd
1ad296059670e92b7ae99cf655bae09d *man/get_num_batch_ranks.Rd
7c9c499e45e276501b0681b7bb5fd05e *man/get_one_factor.Rd
e27b3a05ca3ee7254279919fb4cb6704 *man/get_pseudobulk.Rd
a0058e925409dd6fe252742cd2d82b99 *man/get_real_fstats.Rd
7a48ae9b7a71fe72ff94f73b9e059e88 *man/get_reconstruct_errors_svd.Rd
a7df1ca34451b6c2e1ddc99608abbce7 *man/get_significance_vectors.Rd
7e61870f2a43523ced09055b4aec408f *man/get_subclust_de_hmaps.Rd
5ac66eac636a886b58243348e57c544a *man/get_subclust_enr_dotplot.Rd
f680d784e536411669f88ba5f4605ad0 *man/get_subclust_enr_fig.Rd
9bb81976707cfdaca3802a15104e2da4 *man/get_subclust_enr_hmap.Rd
95b62c0e68f9968ba6e605c7eecead9d *man/get_subclust_umap.Rd
4094ccc31b8ad1db9dcf750735ed290e *man/get_subclusters.Rd
75370191f3a12c3042a40cdded07ecfb *man/get_subtype_prop_associations.Rd
7974099ffab905e1ca47764315667259 *man/get_sums.Rd
2054205a115592ee4a4d5ea53c4e2c58 *man/ht_clusters.Rd
428cfd165f8c8cbea27cb0ec9b2bbe3a *man/identify_sex_metadata.Rd
8806e5d1dcb2e7e92cd9dcef537a748a *man/initialize_params.Rd
df82bfb867c244c369628deb8a9bd00c *man/instantiate_scMinimal.Rd
e743f1390298c0a66628734133fe72a2 *man/make_new_container.Rd
929f01a9b3b17c3b5c41ff474afcb451 *man/merge_small_clusts.Rd
c2725c80974a765792d63f3bd577df34 *man/nmf_unfolded.Rd
0f59c60702f2d57693b24773bb4a550b *man/norm_var_helper.Rd
df97c90afc9a64781c2cadd7be25e6e4 *man/normalize_counts.Rd
cc87b3ed8055a60b167a419923bef586 *man/normalize_pseudobulk.Rd
64ae137d5571ecaacb39d46fec4eeeff *man/parse_data_by_ctypes.Rd
37b4df65464ca770df25346d0c91a3e4 *man/pca_unfolded.Rd
0d073fde8538cde624315370525224c8 *man/plotDEheatmap_conos.Rd
65d62c6ec4454feb263a0ec14759ea82 *man/plot_donor_matrix.Rd
ecd35127e9f4a1fba6f782fdfb92f401 *man/plot_donor_props.Rd
b893f560c516da822e9766786f371ad5 *man/plot_donor_sig_genes.Rd
2c748fb11164e63b39e2b475bc2b1605 *man/plot_dscore_enr.Rd
2fa3f1b277350e73e6f1886d7add4e74 *man/plot_gsea_hmap.Rd
ab482708d2f8463b319fbb00223fcae8 *man/plot_gsea_hmap_w_similarity.Rd
cc08d9f435e0f3bd6c76bf4effac7385 *man/plot_gsea_sub.Rd
e3df5578fb35fd7fa306fc3bc504bdf2 *man/plot_loadings_annot.Rd
292a6766f190b91f93df6b062d48367c *man/plot_mod_and_lig.Rd
b09c73038e1697f51ead14659115301a *man/plot_multi_module_enr.Rd
e1c6bfdcf8e8002cf94c5c58c6c82f1d *man/plot_rec_errors_bar_svd.Rd
fb44b8d4c3aa6b54a547a064046ad121 *man/plot_rec_errors_line_svd.Rd
ec6050cbf1259ea6e99f0de90c9814d5 *man/plot_scores_by_meta.Rd
8f1de12d5c3387eddf075e7877b6506e *man/plot_select_sets.Rd
1ce5859f749f526f439d81b200f9b1b6 *man/plot_stability_results.Rd
b140dbe75ccdad83ca6574da9dee22fb *man/plot_subclust_associations.Rd
a6f95168daefb650dc89532faf3e4860 *man/prep_LR_interact.Rd
bef01e1f71d9cc96dbbecfc7a71ee78f *man/project_new_data.Rd
7816afac4b8b3011312028439e3a72fb *man/reduce_dimensions.Rd
1ebae59232d417cabadbdae68b149ad8 *man/reduce_to_vargenes.Rd
3df006b4a9e48b5d5b8168cddf4292e2 *man/render_multi_plots.Rd
8485c65173e7460520a82f9728f04f35 *man/reshape_loadings.Rd
529d397c36eeff09513cbf522208c1ba *man/run_fgsea.Rd
0a98fbf54a86e767453e903a13d19a69 *man/run_gsea_one_factor.Rd
75c6af2b7b4ef9a62a570020d8494a08 *man/run_hypergeometric_gsea.Rd
c49929113d4db63cbc23b35326454480 *man/run_jackstraw.Rd
13ec28f39d7dc9ed2e82195b1c6fc9bf *man/run_stability_analysis.Rd
20a971ee3c555c9010983abb8fe857f8 *man/run_tucker_ica.Rd
646a4b0627890504806e3522a9829c7a *man/sample_fibers.Rd
578e1dc0bc3383d230487cdbe11ea506 *man/scale_fontsize.Rd
6703cf0b75c7e3b7bc4be38c908c858c *man/scale_variance.Rd
fdeaba0727033bac2daed29533983372 *man/seurat_to_scMinimal.Rd
defd6b40778532d5ea5d256fec69dcc5 *man/shuffle_fibers.Rd
e85f4d1b2ee4d97727688a052c5b9a2d *man/stack_tensor.Rd
0d0fe20382f1a896e64e9c70718794df *man/stop_wrap.Rd
bf83bb5a51313cd6d7b27e77e083ed14 *man/subset_scMinimal.Rd
ac2c9d3b5c83c2ec719a5c1b3f60fe3d *man/test_container.Rd
4b7bc201e69967b173f5100bc2affb9f *man/tucker_ica_helper.Rd
3ab713f053ecf3fad98f8120196e8b65 *man/tucker_sparse.Rd
5524b7a11215e54da1eed5c6b1f67ebc *man/update_params.Rd
072b2dafc528282d5a2330f5e1d0e8ae *man/vargenes_anova.Rd
b9089460d32d751192f9eadacc8dc4b1 *src/RcppExports.cpp
5f2ae5fa7a410cc466118d671a91a319 *src/colMeanVars.cpp
e194e97cee51dc07d9e7cd877272cc55 *src/get_sums.cpp
b3e6fbe751bdfe366c33a56e881e2e9b *tests/testthat.R
22705081173dee57c6d36cd7d37d4087 *tests/testthat/test_functions.R
