9b178ea6b42746f0ee2b6972c658b193 *DESCRIPTION
1b08537c320c2b68e5b8be51eb382682 *NAMESPACE
d63909def9107b84a57bf01ef0c19865 *NEWS
8439365eaa3fcc4890b96eb2dbe66d35 *R/allIdentical.R
6ca21b1a78d589e347a0eb52f059bec6 *R/bedaInfo.R
d38d97778690ee3179ac8f7d489e0939 *R/cumsumprop.R
7d6be43d1a23ab35db449eeb73d3e730 *R/design_contrast.R
16a20f86138c32ec0da68825e5904f9f *R/dfmat.R
e96de539a0363a299f4f510caefe1b74 *R/extname.R
d1484eb3f5169b40625020ca821f507d *R/factor.R
e02d5aecd1f1d49b093c9340b4bad081 *R/file_dir.R
a334169a073340641792a7d785bcc217 *R/haltifnot.R
265b8ca0efa37b5cf9ba5547ae0a8d93 *R/headtail.R
6b2bc0aa053cd3d508ac2f16bb9ca85d *R/identicalMatrix.R
b38c085df51b2876e555a370a7fd42d0 *R/imatch.R
89fecadbb7162032ee9d98005dd97d41 *R/inputVec.R
7be0f8e659ee47d8be124de4956eab7e *R/jaccardIndex.R
f72663120144403e33e63926a28964c1 *R/keepMaxStatRow.R
bb865856b02390b6d529f7f1b7e1aae6 *R/libordie.R
3029c7def0aaab2fcb8350cf13eee11e *R/matchColumn.R
c86f57dbe60c71a95da5cbf8e99506d6 *R/matrix2longdf.R
d3d75e48ab2f74177cfb9ca7189f0cd2 *R/midentical.R
a294a5e4716a8487851289cda258df6d *R/mmatch.R
3f74e5ef933f5524b61be9395de18990 *R/na.false.R
06355700331593de7ce853ba233638b9 *R/namespace.R
191eda7910c28104f0cf1a39e446d835 *R/openFileDevice.R
53f8763f6f1caa1497705789693f8b17 *R/pScore.R
f1692a4864f6136854c2e76777e1f926 *R/percentage.R
3415db95fd74903b4cdaaa73011476a5 *R/pwdecode.R
adf0ec9ce6e611a006279a0b4813a4c9 *R/qqmsg.R
24f9ca3ca1829d9cf2ab49f4cc179051 *R/ribiosUtils.R
6b4872796a05ff781b13535c0c4639ad *R/rocheCompound.R
e2fc855043a264acf9494b75d140bfc3 *R/rowscale.R
2ef1693dd41f4ff274aceb6a8a6f4b64 *R/scripting.R
64a63de3a02c5b2b0bad293cf372d5a7 *R/set.R
acb32e21ef97d9d916cb34342b7e6a32 *R/silencio.R
0a0c1d4ae60ac7f0c0a8e8d84651e042 *R/string.R
6714224ea0b52bf8d3c8b46a40d2889d *R/stubborngc.R
ffb597fb56383a29bece3555413a361b *R/summarizeRows.R
bdd58cedb7f8224fcc6cababbced456a *R/system.R
373a1d02415dc12900e0b35f5841dee3 *R/temp.R
27abb282c1a9af6d80cb583b2419e579 *R/trim.R
85b407ea246be251d5884c16b7324346 *R/tryerror.R
1a55be37143994890aa902dab457388d *R/uniqueNonNA.R
f6f04eb7d7a706d1d2b5d16631362b71 *R/vector.R
3a4af141f1c282ef7535a7fbb3af2a2a *R/verbose.R
2686ed4d2bfadc60f274d3ce393d3352 *R/whoami.R
54ddc2024dabd8b06754db8bb4a64c3d *R/writeLog.R
2e171d9cc3c45a2bec0ba3e6e899ab2b *README.md
80d7f0471d4de4729f27627ce3a07eca *inst/include/affyfileHandler.h
a07ae5101e26f4f6394def78cb3a61be *inst/include/alcoserverconf.h
e927ba7e57300e49e2fa440fb912adf5 *inst/include/algutil.h
9ff3ef5945758199a80d93075ceef881 *inst/include/alphatrans.h
56074652246d1562230a9643d393b481 *inst/include/arg.h
8de24c73419b648980051250584af81c *inst/include/array.h
e2ebb8504be7e2bd568725e41613a316 *inst/include/avlTree.h
4434098975f93c6fc8b9215bd5c7b63d *inst/include/binalgparser.h
a93e52a6d6abf0a537889b8ad89c7ac9 *inst/include/biosdefs.h
54959c464f28f18fc0d96943f99b2ccf *inst/include/biosdefs_oracle.h
85d2d1d3b6217ff56091d5c989b0345a *inst/include/biosdefs_postgres.h
160d4e879f6b4caa93482d5611cc3c0f *inst/include/bitmap.h
3d4c2b42f9a052525a6b98fdc68ba3c4 *inst/include/biurl.h
53baf5cacf9e895a2feebbd7dac35ae7 *inst/include/blastdb.h
14f04c3db5506ba80798330fd9786422 *inst/include/blastparser.h
1748f6291b1faa586a58a8d9124f2407 *inst/include/chemutil.h
5d012bbc733a7579dcd23886f812b70e *inst/include/combi.h
d801e6f63ac226588b1314db4d425e71 *inst/include/eval.h
8f6ebf09870c408da3d4a99547d831c5 *inst/include/forest.h
1dc9409289d6a8fd9478fdc2728146d2 *inst/include/format.h
8002b661e9df2245993a453bcc274818 *inst/include/fuzzparser.h
6ee9661f81958494aecf6d3679cd8242 *inst/include/geometry.h
7a9f4a504d9c28a7566c16a968e6a013 *inst/include/graphalgo.h
2313abf472d876e303aa8d186c31e83d *inst/include/graphics.h
95baecd6057d424ea353a7a36a36dcb8 *inst/include/grpmanconf.h
8dc99ba9c00f5e59c84f675c38d731f7 *inst/include/hash.h
266bc2dd7ecc68e1af390e628f85eae8 *inst/include/hierclus.h
4200915f657514fe950665202e4b2adf *inst/include/hlrmisc.h
752443f16a07b5a321bf6da340ef09c5 *inst/include/hmmparser.h
ac107539097651b7e818c52e7eff77e4 *inst/include/html.h
49aae7d67ccdb84c066ceaef10f98605 *inst/include/htmlform.h
d10fc23033a46a49445fae9943906ca1 *inst/include/iwbiconf.h
8a8c002a04b7443bb492c05a2663f8c8 *inst/include/linestream.h
aafbf2cdff95c7c337d9a4edb1aa86c7 *inst/include/lnk.h
6e05a5f812d48e250a2e0c1e5b2bc08e *inst/include/log.h
6a17be997347a41b28cbe3fc51cfbe5b *inst/include/matvec.h
7b54e7181f3e5ee8b2d370c2a9dbea0d *inst/include/msfparser.h
b32114b32423e33250ea10612eed9c05 *inst/include/notifier.h
9315de112699b12c7d5c7e065167721e *inst/include/notifierconf.h
5fb807d1ecdc03741b5d11c9b2dee9eb *inst/include/pagedesign.h
004914488d48178abf2a0f548f647190 *inst/include/patternmatch.h
604fe8312d007133f69c5f802f42ddc6 *inst/include/pearsonfastaparser.h
bec6851e61b494f73ff750ba25091ea1 *inst/include/phraplightparser.h
34e5f82e4d6ba03a9c6cf02083684e33 *inst/include/plabla.h
6b2ffae63f9d136c0b5cacccdaf7c554 *inst/include/plabla_conf.h
e67c087c95043d3ee7556069f3ce0907 *inst/include/primer3parser.h
9b26784a46ecdf00bea63b1eb19ce338 *inst/include/properties.h
316cb05ba5096e75677277624e7b1507 *inst/include/pwdecode.h
3bae975976293e1d4b1063cc0672a486 *inst/include/r_endec.h
698e7627783aa363d7c3bad06ee305d7 *inst/include/r_mmatch.h
c6cad0f0ab8fcd65cf61d05053c385b9 *inst/include/r_trim.h
24e5699a71c65759bac3a08f96293a96 *inst/include/rdbu.h
038170a93a427d2bb736e4661f549dd7 *inst/include/rds.h
75f1cf48be6dd14ed09bfd96919d8a2f *inst/include/recipes.h
63ac477386e0a9b70993097ab76d3bbd *inst/include/ribios_utils.h
8219c473dcaeb7f73df3fb8ee5d9cfa4 *inst/include/sawiconf.h
adf56fa8fe4c8e48812e537298c27314 *inst/include/seqautil.h
94184e58f8b50ec6dd4bdc4e5a052a92 *inst/include/sequenceAlignment.h
a40b3d1a83fe160d117ed7b0732de139 *inst/include/sequtil.h
634c3627c6bb2bc7e771aaa6d792934b *inst/include/statistics.h
01f932b6c609da1b1e62e8b9e5d4e4e5 *inst/include/stringlist.h
37c5a808f3aef9d9f1016a6a933a223b *inst/include/switch.h
29c95f06496f17cdc48fa50934089e92 *inst/include/usrmanconf.h
b57e0530b52b3b5b21084a0936d22e0c *inst/include/wiseparser.h
284350cf597859e2ab24c83a1662e6cf *inst/include/wwwsession.h
58c905cbef39e4468c934c437c334685 *inst/include/xmlbuilder.h
92cffb59be9e81e12e7ddf9ccd00fa42 *inst/include/xmlparser.h
da7f08c01c5d4ac2354f878008686d84 *inst/rmarkdown/templates/ribios-rmarkdown-template/skeleton/skeleton.Rmd
34448c441e0f4029916a6f21594e8b6b *inst/rmarkdown/templates/ribios-rmarkdown-template/template.yaml
e7078bfb70e4d58d1e5566d0c6f298a0 *man/allIdentical.Rd
604f59c3c1e4338624b0eac3df3a3fd1 *man/asNumMatrix.Rd
96a720749e3b77a0e8133d8bb2467347 *man/assertColumnName.Rd
da2a0e1030bfa499dd0d9587dcd27d83 *man/assertContrast.Rd
38bae40f6ff830165edcc585306c3742 *man/assertDesign.Rd
0b431d31fe30bcf1fa15c02950899656 *man/assertDesignContrast.Rd
1673aaa18807c55f042ccc6e9a940b5a *man/bedaInfo.Rd
7d656caa24f74a66b188cb36fd694979 *man/biomicsPstorePath2URL.Rd
00ba24ab7d5f1d3b7f8c87978f0a421f *man/checkFile.Rd
4307fc4870ac52a1aa6a48c8d821facc *man/chosenFew.Rd
60e3e2c584417654026f600a3eeecd3c *man/closeLoggerConnections.Rd
1589c6a586793ac7aae385bd621bb9f7 *man/columnOverlapCoefficient.Rd
fd13f957a397d1fa9935978dbb147d9d *man/compTwoVecs.Rd
c2497d482af5be4cff0405c33d131972 *man/countTokens.Rd
21194e748cd88f83fda749234ed6d624 *man/createDir.Rd
858c1530fe3ee82c7db2ee46d48d3beb *man/cumJaccardIndex.Rd
4c770443624c8ec5d147c54217cc0386 *man/cumOverlapCoefficient.Rd
47e7f81bf5f5e13ed31c6b2262eb8e98 *man/cumsumprop.Rd
2bc3567f23759ca8965e863a71c8840f *man/cutInterval.Rd
225015d29008477548420f4de5ec4304 *man/dfFactor.Rd
97ede33fc87f98fb12581f9a050177d7 *man/dfFactor2Str.Rd
cb2b83d59f489c2f98361878116b4d72 *man/extname.Rd
6d7507b296f0fc246f2f4755b6f534db *man/fixWidthStr.Rd
1cc08231e778278cc8088cf8acc6d67c *man/getDefaultFontFamily.Rd
55e75b04d21d75170ed23273267a0a57 *man/haltifnot.Rd
70399948e8b43e01ecee9990543d3a58 *man/headhead.Rd
06553cc33b8f5185f66d2925b3755850 *man/headtail.Rd
5552569024770acb5922c1fc9344d01a *man/identicalMatrix.Rd
429f4b64bf51324c323ababbb022b56b *man/identicalMatrixValue.Rd
003e83d8ad35d596ec05c8aabac01e46 *man/imatch.Rd
b65c9deef48054fb5758773a2e8f810c *man/isDir.Rd
11ba8071c4090e492dc4704859e63b1c *man/isError.Rd
84ac557d80ab9ae00caa48e28180bd9a *man/isRocheCompoundID.Rd
c2d478b896d93c3961c2c34402175549 *man/jaccardIndex.Rd
e0f8327767e8e066d68e5acd8df8d766 *man/keepMaxStatRow.Rd
8d74a2297377064c1331032abbcf65ac *man/libordie.Rd
c5c53b15da7f38c30e05b8db97eb2b0f *man/list2df.Rd
2e4a69a08c1efbf6140afdc37d1614cb *man/listOverlapCoefficient.Rd
3781f9234134f89e91df5d5aa54e6c85 *man/longdf2matrix.Rd
04f07205a806f481f5c7bf43877da0b1 *man/matchColumn.Rd
9023de3dc29d26f7366336d1c63decb3 *man/matchColumnName.Rd
e41a5b2c51468cfd364a0e52d8a8f7a5 *man/matrix2longdf.Rd
d74c69a9ab28c1baaaae15d7fa5dd28b *man/mergeInfreqLevelsByCumsumprop.Rd
c1e75484c74e3f10722fb4c6b44c0f05 *man/midentical.Rd
bfbd750114c3f9c5667135c46a7f172c *man/mmatch.Rd
aaea781290371bbe16ff0e11c006b0b6 *man/munion.Rd
0f54d3b88d6b9ea4f097d43741a56c45 *man/na.false.Rd
fb705de4e4b1343ca64fbafa3afc8f2e *man/naivePairwiseDist.Rd
e6d7c6dc40c5b9583a494206d7f245f6 *man/ofactor.Rd
d13233d24f1a392cd392b7c7fd62cba5 *man/openFileDevice.Rd
4013cab465252dccc0db288b33ba85ac *man/overlapCoefficient.Rd
978a9f9c56c2a62bc483387a9778cba5 *man/pAbsLog10Score.Rd
489cd571c46e932ea9bce5ee6abc741f *man/pQnormScore.Rd
2c659c744eee4e526a19bc3fe489ea30 *man/pScore.Rd
0785a03379693092bdf0d3cb0b1b0b18 *man/pairwiseJaccardIndex.Rd
9a5c427b4e021c1d6e83897919fceab0 *man/pairwiseOverlapDistance.Rd
0d4fc75756944f128b3f8b0fbec07733 *man/percentage.Rd
fcd008d55f8649096526a5d6e1fe9977 *man/print.BEDAinfo.Rd
c1fb1e6c8afd333a8429cfdfaca56c29 *man/putColsFirst.Rd
e8b95a4e09d5708b95eefb23149f0cc7 *man/pwdecode.Rd
5e2652545180518d98e12c8abaf803b7 *man/pwencode.Rd
4e49d6de73652a8568df1d26ac7c5e19 *man/qqmsg.Rd
926fdf9eabaa84378d969b6899fdd90b *man/qsystem.Rd
bad2a717f7532822f4b0bd50365caef1 *man/refactorNum.Rd
81a1a684b6af0cce1c8e8e34c44a393e *man/registerLog.Rd
b9f68aee47e531c3debffe706a208365 *man/relevels.Rd
8e2011600cee3bf96ddd13a93949e60f *man/relevelsByNamedVec.Rd
535476ac2ff6d80accc4c8745034a51c *man/relevelsByNotNamedVec.Rd
bd0373f6a92aee2b51dbc5a5042b3fcf *man/reload.Rd
6b66803256d559ab3ba116fd15a74f3d *man/removeColumns.Rd
104b2f8b8e5fdec6a1847cef48a44b9c *man/removeInvarCol.Rd
d8dada070cc7cc4ec93c0b114f22d683 *man/replaceColumnName.Rd
90c73bc836762bf8d70b8dd324af4bdc *man/ribiosTempdir.Rd
728c0041a5755159af70f74781b3835c *man/ribiosTempfile.Rd
ed4525b6f40390104d6e3a66b8504e33 *man/ribiosUtils.Rd
70ad000ad18ba1b96a222166b69308f7 *man/rmat.Rd
e8d3eb335b669734a46039b52cef11d0 *man/rocheCore.Rd
cdc27099b35d2716c1386aada8229117 *man/rowscale.Rd
d1cb6af74bba133feb7e78c2d3965751 *man/rowscale.matrix.Rd
963d51e707d30fea5d282fb85d7fbfa3 *man/rsetdiff.Rd
5dd01554d01c7fb06706ec8892f44551 *man/scriptInit.Rd
993caad3d90e675818d8e186fbf08127 *man/setDebug.Rd
e53f4f1fbb173038439805fe402387ff *man/shortenStr.Rd
e90f534ed5ca1855e91e1ee08a817fc1 *man/silencio.Rd
4e45cdb5ad640ab3bf092d19b6d57f75 *man/sortAndFilterByCumsumprop.Rd
9bd1292e9fc68ff2aec9fe0255c3aedb *man/sortByCol.Rd
3d9d7f57aab16769a8057d3aaf4a8bc4 *man/sortByDimnames.Rd
2d71c7e1602ed2038a084fe3f9b90ddf *man/strtoken.Rd
d310a93f62b57203995a17dac461a6a1 *man/stubborngc.Rd
c3edfc625ed1ce382214950c3b6aa855 *man/subsetByColumnName.Rd
8649678ac3c3dd446245bfee5a356d54 *man/summarizeRows.Rd
c96a9cf2a26720b53d01225c0764479b *man/trim.Rd
53b4d0c99bc92199d4f69cb588c3a1cb *man/uniqueLength.Rd
a6c0f6b821a56d7eabf4be55e0ecc865 *man/uniqueNonNA.Rd
76b143b7c5403d87788c91b5c6c334ee *man/verbose.Rd
c1edb5a72ce92bfd49701bb301ee2aaa *man/whoami.Rd
2f9a5b75e264c17074e478c3e2a658be *man/writeLog.Rd
409ee4fe37210ed6cdc9f681ae18b298 *src/Makevars
49813bf3ed9369da019c84fed11388bd *src/affyfileHandler.c
d49c80bf69e5dc5e360dcde1b883ba5d *src/algutil.c
0e95c024b1b19480f1b9a92a18be5288 *src/alphatrans.c
ec55c732d8342170eae6eb88bc225d3b *src/arg.c
0c7bf8b41281734207784589345cdeea *src/array.c
c7ea34168dd1decc700931e3fa1e1b71 *src/avlTree.c
80e50424a80aa89620c096f8bc816d18 *src/binalgparser.c
ea4baa50f4f0de3fccf8462d9d2f4871 *src/bitmap.c
d0023265d2250ae25d6b86710dd835cf *src/biurl.c
e4836c9a14d444f7064d78ce524eb59e *src/blastdb.c
fee5b8d731529f07333408df1f0a3c7b *src/blastparser.c
cda1424f5c672b32724a511e3ecb4846 *src/chemutil.c
cbbb9f02822d0635a74420935b0b43e8 *src/combi.c
3c615edc27870b1ca1a49234afd91c0b *src/eval.c
211f83d3df9f802ee2b17d1bea3ebea2 *src/forest.c
849b58a831577ab8787e1f315d380282 *src/format.c
93d3c81bf2d8216f68037dad1d38ae36 *src/fuzzparser.c
1a43c674bc935b7a805338198281faf5 *src/geometry.c
dece68311f1b86377fde1dc2eeb6e8c4 *src/graphalgo.c
bbef1501265c588351eae9297bef4c6d *src/graphics.c
c760fcab580ef7aca02250a11a1d6109 *src/hash.c
12d288e1c408db597d723d0c39b6085c *src/hierclus.c
174cb16cdc85d8166c5f4ff9454ddd23 *src/hlrmisc.c
829d3a11930d19cc1edeec3a58830a76 *src/hmmparser.c
37a04c7bad2d0b67cee814accf4a8b87 *src/html.c
7e9a57445be7cab8b6d65549be7bfbb2 *src/htmlform.c
07db78fe417c9fea14a4e02bc4dc42ef *src/init.c
ae50beb33c89c1af3176ef09f786f640 *src/linestream.c
61450cfbbbb48e6545074db3085cce0b *src/lnk.c
696a62e8f3f839bf40003ea9358486d7 *src/log.c
08b49d922b68e85a654f4bcb9909fe93 *src/matvec.c
2e3b07662abf4d0ac094e86c77060336 *src/msfparser.c
6ec4ee72fc25b5d431f5d35d8682f545 *src/pagedesign.c
194698e881128f8e4cfd65ad0a39556e *src/patternmatch.c
12fcb44124d4afd5a13dcd0e1bbf1c2c *src/pearsonfastaparser.c
6272c4c9b463709c6a09952522b0d4fa *src/phraplightparser.c
fa0e9f43c8c99d9c92e7d509bf0239d6 *src/plabla.c
804532f5662fdafd0d0ec99922c51533 *src/primer3parser.c
fdf88a7cd26fb4ebe36af11c8ea5cccd *src/properties.c
6e4c38371379a5c440ef4522ff0b5bf2 *src/pwdecode.c
4c00b5f622cff74f449663a059c2bfe7 *src/r_endec.c
b897c6fa6fac5ca27672165bd7a242b6 *src/r_mmatch.c
178d53e13d5071e6261764af7b52b436 *src/r_trim.c
0d181ec70989129e706d5838e4c04c36 *src/rdbu.c
b7e748f083804c7325a4546515b9bb6b *src/recipes.c
df3bc2aff8c1351cca600a7f7fd4c8f9 *src/seqautil.c
f1e3bb9d625b29eadb2096ac9c786480 *src/sequenceAlignment.c
529bbc4f2d8e0b113214869912df1ddf *src/sequtil.c
0d9222c75e700a3b94b8c8c10f907801 *src/statistics.c
0974fb5ed5670529976e8425f0448f2b *src/stringlist.c
1ab98f35714bc090e1fc21a221c71405 *src/wiseparser.c
5884fe2be66b017b10c8034efc0dccbe *src/wwwsession.c
507e3325f58f16eddf9c6e0fb72f6a03 *src/xmlbuilder.c
63d1e5f785e933f57413d3f11f311db1 *src/xmlparser.c
e7a146a20c85b941f3f03c7f01cdc5d1 *tests/test_extname.R
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