Package: rehh
Maintainer: Mathieu Gautier <mathieu.gautier@inra.fr>
Author: Mathieu Gautier, Alexander Klassmann and Renaud Vitalis
Version: 2.0.4
License: GPL (>= 2)
Title: Searching for Footprints of Selection using "Extended Haplotype
        Homozygosity" Based Tests
Description: Population genetic data in form of "Single Nucleotide
        Polymorphisms" (SNPs) is often used to identify genomic regions
        that have been under recent natural or artificial selection
        and might provide clues about the molecular mechanisms of adaptation. 
        The concept of an "Extended Haplotype Homozygosity" (EHH), introduced by
        (Sabeti 2002) <doi:10.1038/nature01140>, has given rise to several
        derived statistics designed for whole genome scans. 
        The package provides functions to compute three of these,
        namely: "iHS" (Voight 2006) <doi:10.1371/journal.pbio.0040072> for
        detecting selection within a single population as well as
        "Rsb" (Tang 2007) <doi:10.1371/journal.pbio.0050171> and 
        "XP-EHH" (Sabeti 2007) <doi:10.1038/nature06250> to detect 
        (differential) selection between two populations. 
        Various plotting functions are also included to facilitate
        visualization and interpretation of these statistics.
Depends: R (>= 2.10), rehh.data, gplots, methods
Suggests: knitr, rmarkdown, bookdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2019-02-13 15:30:22 UTC; alex
Repository: CRAN
Date/Publication: 2019-02-13 16:20:11 UTC
