be169d43f6abeac66b2e7d463d5ecdd4 *DESCRIPTION
a42dadc892ad89ade4b39fc8fee79b41 *NAMESPACE
b13a97e00519d81a66ff2fd01af595dc *R/RcppExports.R
14c4cba43f05cc566c57a81b9a35aaf8 *R/rags2ridges-package.R
e780950a2960a078f5de20e64ced73ac *R/rags2ridges.R
f2be1057b28fcb9b30760ae97f6b7640 *R/rags2ridgesDepr.R
de25e48773ca181ec2292e4cf9b75de1 *R/rags2ridgesFused.R
2b6a4ad70b4d55b0e2989e2d4ffb77fa *R/rags2ridgesMisc.R
228da059d78ae8a05ee18c2be10412e2 *R/rags2ridgesVariants.r
f5f58c943f7cbf4b3cfb8f75a5a34685 *R/ridgeP-methods.R
1ac93206178e73e588cd801eff61bd0b *README.md
418f69b45eb060fb5b2a0f9b1950b832 *data/ADdata.rda
b3f3712373aa861a5ff46fe5d7d18c3a *inst/CITATION
0f049653ffc8d9d05a1ad14526618cad *inst/NEWS.Rd
cdf52f862a37230f3d0e8dca2deba14b *inst/RAGS.png
0516fd5a6526b52c2a4309080e359a96 *man/ADdata.Rd
842005a951882a43409a605df6c32e9a *man/CNplot.Rd
bb68cd62172a1afa3d25bc5a0d059259 *man/Communities.Rd
b21db0dc7b914931bb34d96011aa02a6 *man/DiffGraph.Rd
5e5bf0a1c5c8552e4edf5adcc2444bf5 *man/GGMblockNullPenalty.Rd
8a551b4125403372e93fab588d0c667c *man/GGMblockTest.Rd
50a37d5c0378cba1deb16e0f1fb25484 *man/GGMmutualInfo.Rd
ac10a2dcc9cac3cac7c640d125ae860b *man/GGMnetworkStats.Rd
34daf35208070dec1a54d24956f94a26 *man/GGMnetworkStats.fused.Rd
981fc84b36e63aa20c477b6cb95b2d4b *man/GGMpathStats.Rd
e30d84b8e45ff0a61ad4d619c2147187 *man/GGMpathStats.fused.Rd
5a656427f6acd731b7d99f5f8225ea19 *man/KLdiv.Rd
eb0aafda82ca7d32db7ede7ca52fb059 *man/KLdiv.fused.Rd
fa3e3ee88fa36e1d4837baac9c895f71 *man/NLL.Rd
c7f167c7040538d8e276a0709b26b9a9 *man/Ugraph.Rd
c39cf62455562bd58db534d1fab794c2 *man/Union.Rd
ead67265ea688d7d9ce443d25099c0ca *man/adjacentMat.Rd
6a5a4b7188f3587327b0d0ceebdf6799 *man/conditionNumberPlot.Rd
c39119c26b7da78e75fbd452a18d72f9 *man/covML.Rd
694d316d25d3d85ca99ac3980862ca47 *man/covMLknown.Rd
96e04d0c9b08df70693e75d5f8559606 *man/createS.Rd
2399480066ff8cad250a80ef6883589f *man/default.penalty.Rd
101664634b28802a8b7c082169ab90ce *man/default.target.Rd
4eb48d86a57c8fe977b295257ef57167 *man/default.target.fused.Rd
ddead207a0fea7f3211bf8863149054b *man/dot-armaRidgeP.Rd
ae6f25dca6096ee3eec07719ea35e825 *man/edgeHeat.Rd
6dfd7464550a35b6e557f3886a8e8daa *man/evaluateS.Rd
503e13b00f8ccf0e2971a963a2f1dab5 *man/evaluateSfit.Rd
4bb38992791593d1408a5376aa786b0c *man/fullMontyS.Rd
759a635f6b9b90f5a4bfd3bd291f4a6e *man/fused.test.Rd
ef3870efd325589acdde280f84747d0a *man/getKEGGPathway.Rd
364cbb086a7bee07747874583ff286f5 *man/is.Xlist.Rd
c61591fc4b30a17717db52d1ffc54851 *man/isSymmetricPD.Rd
3b1a595b47534b3baf9bdf54c69b4b1f *man/kegg.target.Rd
7d5f70cfd6becad4484c5a5a5886b6f2 *man/loss.Rd
89e38a597ade6c0a0e7a9742d7babc49 *man/momentS.Rd
b1b51eea3f55975a513f33cfba882135 *man/optPenalty.LOOCV.Rd
c486fc2e4e4ca8fcc277813f99c3564e *man/optPenalty.LOOCVauto.Rd
a4ce9d83d7615c596974b023ffce560b *man/optPenalty.aLOOCV.Rd
3e5229deed019b1ffe953ff024681cf4 *man/optPenalty.fused.Rd
0c63a904e554715303464a066a5f4b36 *man/optPenalty.kCV.Rd
524c2a1f72444a93160b093b5f4199df *man/optPenalty.kCVauto.Rd
a913e9441a822a8dc7422d8a16346005 *man/optPenaltyPchordal.Rd
923d3891095b2f8ac535c49a5e50d620 *man/pcor.Rd
303d175a347cff98ee3a66e650e07a7c *man/plot.ptest.Rd
9eb9394fc965e374b5a181d403942fd2 *man/pooledS.Rd
d4265c2dcf7fd32a574d70d99803440f *man/print.optPenaltyFusedGrid.Rd
7aaed0c3e1248f5b9e4091e6e466861c *man/print.ptest.Rd
bad3081d025c9046a0b8e5bb9445feb7 *man/pruneMatrix.Rd
291efc9fffe6e56f3168ef2b3f7f5c94 *man/rags2ridges-package.Rd
a871d1c71341b3dde16bf6db640bcbe8 *man/ridgeP.Rd
9f274234b8e00d9e4330469ca120d456 *man/ridgeP.fused.Rd
be8f80fc0ee32aa9317a9b8493ac9c6e *man/ridgePathS.Rd
4b1ffdfd77e71000a62544fe0b518b9c *man/ridgePchordal.Rd
455ea4f741b28d667838e747c09e2bfa *man/ridgePsign.Rd
185a30f8a34ee70874bb25abd3e4f195 *man/ridgeS.Rd
0172ed9e5a4b3f2fa36cbc788870efe4 *man/rmvnormal.Rd
485c74238907e65ebad33eeef2815266 *man/sparsify.Rd
6278e67dd53d19eeec8c4b24ed23967a *man/sparsify.fused.Rd
0893647f662d796928f455e4062d2644 *man/support4ridgeP.Rd
37313dda69de351db1caea23791f6f14 *man/symm.Rd
9bc5aa7d4334d43640f515c9a1fd70bd *src/Makevars
9bc5aa7d4334d43640f515c9a1fd70bd *src/Makevars.win
def256a7e46ac681ef734cb47b87e043 *src/RcppExports.cpp
621a1c3f4fa2b9421128b7f84aec3767 *src/rags2ridges.cpp
9b5628ba22813aab0c9d786f412a9f12 *tests/testthat.R
5cb5e60fa273e970fd437a2750bf355d *tests/testthat/helper-P_alt_ref.R
8eed257c8840e398057bd2766f0b3dda *tests/testthat/helper-P_archII_ref.R
08adb7f15903c97c8d4604c8a971358e *tests/testthat/helper-P_archI_ref.R
f5926de26e9a03d680bee2e9f791385c *tests/testthat/reference-values.R
3c03eeae250770a8aa1aee2858690aee *tests/testthat/test-armaRidgeP.R
1ae31eb3d8b999e31de16ba962a22315 *tests/testthat/test-armaRidgeP.fused.R
3f2e0fe494e20aaf1a5c6d771ee9f22c *tests/testthat/test-default.penalty.R
0f6a90617dd090bec06908a91bea0988 *tests/testthat/test-fusedUpdateX.R
cac948750b22790aa228e4754848d0e3 *tests/testthat/test-isSymmetricPD.R
88cd0d7535b4f9420c49ccdc47b453ef *tests/testthat/test-pooledS.R
a95b5c6c2fbac0c8ea92d71670c2b8b8 *tests/testthat/test-ridgeP.R
baca779de1b9de159b33a5d4d173b5f1 *tests/testthat/test-xfcvl.R
