# Generated by roxygen2: do not edit by hand

export(annotateAHO)
export(annotatePeptides)
export(annotateVec)
export(createDecoyDB)
export(filterSequences)
export(greedy)
export(greedyRes2Matrix)
export(loadContaminantsFasta)
export(loadContaminantsNoHumanFasta)
export(loadHomoSapiensSignalPeptides)
export(loadMusMusculusSignalPeptides)
export(makeID)
export(makeIDUnip)
export(prepareMatrix)
export(readPeptideFasta)
export(removeSignalPeptide)
export(reverseSeq)
export(writeFasta)
import(AhoCorasickTrie)
import(Matrix)
import(doParallel)
import(foreach)
import(seqinr)
import(stringr)
