492bda0537d2addfb310bc4f2c4e4080 *DESCRIPTION
75488a997730a450d637f7deecc60525 *NAMESPACE
7ce4fe70071e0e692701162e4d019bb2 *R/DeprecatedAnnotatePeptides.R
c63e861562e93b7f407a36f71e0c9a8b *R/annotatePeptides.R
283a15f8f9233c8b61da20c4d56d73ff *R/createDecoyDB.R
feb1c7e587295dbcee5a0238c6841371 *R/greedy.R
dd238de409752359aaea2754b14e1d7e *R/hello.R
06d101279b63b186220618eb5993fe31 *R/loadContaminantsFasta.R
0c061afdf725a39ea1567f78850c74f1 *R/prepareMatrix.R
1b93b2a581c1146e34408d690d52d625 *R/readFasta.R
510bdf1fea26d71dcd2338a19a9040c7 *R/removeSignalPeptides.R
f7aca736cc5e48a7050c866d5039d4cc *R/reverseSeq.R
a217e31566c9e02c8f994150f5fcf93d *R/writeFasta.R
0286ce9ccf86d36d3d147fa2dc05b09a *R/zzz.R
c8da048bc4d8268584114b8fc6bac9ea *README.md
43ac7a02ef48592e835aac87a73b3296 *data/datalist
b25f79ce4684f19a301b6afcd705d9cd *data/pepprot.tab.gz
c7ccf0b17af1aff0e2d77b7e4ce80260 *data/protpepmeta.tab.gz
ede36a7f565af2f3a8916ecb15894edf *data/protpepmetashort.tab.gz
f36ee8e737f4ab7f8652350ef1dbc401 *inst/creatingDBs/CreateDB.Rmd
9c1157c67baaadd6bce038f5f8deb009 *inst/creatingDBs/StartWithProzor.Rmd
76a90c7dd831da20f1257e0e0d9e7974 *inst/creatingDBs/fixCont.Rmd
fe2f5f148a810d8cbf26e4424e1ef8cd *inst/creatingDBs/specAnnotationMilena.Rmd
7df7cf5bea6d6512318f0d2eda54e287 *inst/extdata/UnimodMappings.txt
9457fdb60af51a4528df051e066efec4 *inst/extdata/fgcz_ContaminantsWithAnnotation.fasta
b3784d74529015178ac1ea9a0b3c1434 *inst/extdata/fgcz_ContaminantsWithAnnotationNoHuman.fasta
b136d7e03e29569368b324e75a8fded0 *inst/extdata/fgcz_contaminants_20130115_patchedWithRespectiveUniprot2.fasta
2d55c5981fa0e240a4767a8774180644 *inst/extdata/fgcz_contaminants_20150123.fasta
0f0ed202417cca6e37a60e79dc895fb9 *inst/extdata/shortfasta.fasta
78dfb64976cb9a2aad6ace0c7e472c96 *inst/extdata/uniprot_signal_homo_sapiens_9606_23032016.tab.gz
ce280ac34a7ec69f40898adfb25fe605 *inst/extdata/uniprot_signal_mus_musculus_29032016.tab.gz
68cb87314fe00c5d1480391849afdfa2 *inst/extdata/uniprot_taxonomy_Oryctolagus_cuniculus.fasta.gz
e871b4feeb30512096e2497f93bcf30b *man/annotateAHO.Rd
ce60f9ca2a050b5366607492b88471e6 *man/annotatePeptides.Rd
6d510a01a3090d6519a50be5ce8fb065 *man/annotateVec.Rd
2a9f99d8b9e6d93e0eab8a02a38dee30 *man/createDecoyDB.Rd
f463fa96863de924f2d2a71c2e2ad52b *man/filterSequences.Rd
730530fd2f8d1825ddc2f00e3fc946af *man/greedy.Rd
af2f4c92f0f9e6b896cb35abbd60447e *man/greedyRes2Matrix.Rd
a26aef61936c3461215c9b0699d92b65 *man/loadContaminantsFasta.Rd
2f0930dd4d08b43c76e0904f2dc88414 *man/loadContaminantsNoHumanFasta.Rd
813a7d31d992d6e9d5ca097bb671aa02 *man/loadHomoSapiensSignalPeptides.Rd
4a9f3f72aea05aeeaa54a4baa8766ffa *man/loadMusMusculusSignalPeptides.Rd
beb34701df5fbecd0cf380f35c408394 *man/makeID.Rd
a92256dd08d236efd1d7047aa29e9c4d *man/makeIDUnip.Rd
51c3567ec34a04de2f82f66d851f69be *man/pepprot.Rd
beddfb50edeac9eeea2275211d5c022d *man/prepareMatrix.Rd
eff1fc16b351bef25955fa3fa61ebcfa *man/protpepmeta.Rd
37a801cde54ffe3e7f8540fd23cc5e94 *man/protpepmetashort.Rd
ea63f4f4c07c3e7b94f17e48c06e2c83 *man/prozor.Rd
e0e43a7f7028d17239010c087cc166e5 *man/readPeptideFasta.Rd
40c940ec2ab7739103c3dddb6b19d699 *man/removeSignalPeptide.Rd
019c41103e274dcbc6406fd69c8607e7 *man/reverseSeq.Rd
257e73754088a61c097edef8db087962 *man/writeFasta.Rd
