8bdf71d0ad823e6f8e52a415d7f02c2e *DESCRIPTION
5c38bea44e728150e0cdcc2dce29efb1 *NAMESPACE
1bb7bdec684eb8485859b09b9df38623 *R/aaa.R
c9ac1fccbd75cf8b05e369331dbd1da9 *R/basic-probes.R
a566197fa432969c513a26d89e753e55 *R/bsmc.R
4ffa2a16494e3780646d1adb15cfa5f5 *R/bsplines.R
3b2b96b9a075a25186efce51a26e3584 *R/compare-mif.R
3cfe018c21246c259cd9464d82196782 *R/compare-pmcmc.R
a39b69bd42676c6996d606311153d10b *R/dmeasure-pomp.R
e4482570de6de2c14844dca425899db7 *R/dprocess-pomp.R
2fc6009dab61a62a82fb0d3c5108e5b9 *R/eulermultinom.R
9e55f31a1efc67c1a53f436f85f4b886 *R/init-state-pomp.R
63f56a035bac21ac86acd993cd6eb647 *R/mif-class.R
ca7fecee5b0e9e51a5cef22e1a261be0 *R/mif-methods.R
79b9772273500443141b35b263af7e6b *R/mif.R
090375e09cb9dc99c1ec2c2a12721686 *R/nlf-funcs.R
72297f5f562e38302f9bef6e286e1c6d *R/nlf-guts.R
901c8c50f98f16eb6821c339c5d726f6 *R/nlf-objfun.R
a947aa4a594b19ab7b9e2b02573dba9c *R/nlf.R
af67ea43909254a689a401ddd0517975 *R/parmat.R
88a9ffc10f527f2b90500489f6bdd841 *R/particles-mif.R
ea99349a23362d15c245c46d7f53e514 *R/pfilter-methods.R
2dc3737434a4df635a830c3f2e996c18 *R/pfilter.R
3c41786b5db5cf6559de3207021095a1 *R/plot-pomp.R
ad600e4d67921494a1cf92b09c9320f3 *R/plugins.R
9b14044f6399bda0154581c01dcf308c *R/pmcmc-methods.R
e369fb1e491529ca89900118589b8fa6 *R/pmcmc.R
75b8463568c8cc3de452e6632b6f0696 *R/pomp-fun.R
29f1d3851f233c71c49bcb18fcef8370 *R/pomp-methods.R
bf514a0082a1df2151735719460dd5b3 *R/pomp.R
2f2b188d4f4b44d975b415d348616f8b *R/probe-match.R
cb64f35ac3bcfadb73323d72e528b3cc *R/probe.R
7d872aca9ef07cdda22eaa56cf3bdf7f *R/profile-design.R
6b0dd7744067fefd9629a0e7890d98e3 *R/rmeasure-pomp.R
68df02325736a7f6dbb3e3978faeabce *R/rprocess-pomp.R
e365bfe54e72626979061c1f80010daf *R/sannbox.R
94441d53abd9e68a25b5e3c8f9ae98ee *R/simulate-pomp.R
4b2e5535a07f5493cb4378efcab29971 *R/skeleton-pomp.R
8315eb1d0ec16f3306d9f06675f74efe *R/slice-design.R
0cd404d040c9446f1a9f773cce03cbb5 *R/sobol.R
77ef7942738c07b437a3b53dd5f3e660 *R/spect-match.R
122e0a96567833df6f31a4c649440e42 *R/spect.R
1b9c08f4b50add27aec3d80f70e1b617 *R/traj-match.R
cb549b50d303474fb1bfb3eb3ba71ffe *R/trajectory-pomp.R
068f805e96fb434b2ea46156bcb8ad59 *R/version.R
aafb708185e361915654614cf8f7807a *data/LondonYorke.rda
7109eecf97421639be4adf49fad4f487 *data/bbs.rda
30f9356fe51df7adf010b4e884f35b26 *data/blowflies.rda
1fd0c7937e89a5ac479c80c84ee9b3ff *data/dacca.rda
f8402a17c5bab191997468f268a33001 *data/euler.sir.rda
cae8a2f3ccb8a7a9e8a4b16960dfaeeb *data/gillespie.sir.rda
ea4d429b1d7d663f1486832fccc2772b *data/gompertz.rda
939301a6c5fd3bd5db832dda78448dc2 *data/ou2.rda
4fdbe03ea29b9d7bdc663f3a7240a4f1 *data/ricker.rda
399416c05aace10cdc9e5516e3d52803 *data/rw2.rda
ffc88de60608f67192d4f9f8f891ccce *data/verhulst.rda
21934c68ab97747102fe8c6c5c6d0644 *demo/00Index
d7f4677218c4f396b34723bf52448cd9 *demo/gompertz.R
013075209ca710281ed01ca66498e8e7 *demo/logistic.R
b86f2da79a1f6343c3f8be2ed4cd1c82 *demo/rw2.R
83b127e23a9bf712f3056c7049333ae2 *demo/sir.R
84f6694af5901c42cd8345748c2ab85c *inst/CHANGES_0.29-1.txt
d31d366b9a67de70155edc454b561d0d *inst/CITATION
ec0b5ead4f6380decd6f68d56bb55f7a *inst/ChangeLog
37483d9025577e53130dc59df034c53f *inst/GPL
6c9a81cddfa5cea615df33461453dfd6 *inst/LICENSE
8338419b4d47912fd3834c19bee1ed6c *inst/NEWS
ae883e3c49ec6386c290ec2314b2781b *inst/O_CHANGES
a1a809279e3ad84d6d4bddd60e484db2 *inst/TODO
b4c8f7fe9f8b4f1c8295bd00cc8ac6f8 *inst/data-R/blowflies.R
4494fb2210540fd1955da2402564facf *inst/data-R/blowflies.csv
91b48ebefbceef0e4b9c20fd75ac0122 *inst/data-R/dacca.R
3c4b65504895b14d6fc309f3dfa23462 *inst/data-R/gompertz.R
005aeb1a6d21abc1db71eaa924ffb9cf *inst/data-R/ou2.R
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653fa4e7e698941237f956a9c3341b2e *inst/data-R/sir.R
ed23b6d86ebba1c5924e7a7a5079c841 *inst/data-R/verhulst.R
37704a4e2d944ce31f8986da4260220b *inst/doc/advanced_topics_in_pomp.Rnw
67046b06cc362c023ca138aca0a2ef4a *inst/doc/advanced_topics_in_pomp.pdf
16a71f091610f74e838c7be43352f115 *inst/doc/bsmc-ricker-flat-prior.rda
018ec411bf45d4976045d6ac24d3f453 *inst/doc/gompertz-multi-mif.rda
5ee4f348814116ccec5e0cce581e3395 *inst/doc/gompertz-trajmatch.rda
2cd20e57bd8883ec6b95bf1ae7303b5d *inst/doc/index.html
f4659de20411d7e4d05af4495d879952 *inst/doc/intro_to_pomp.Rnw
dd3e275ee09c49a947857b79787a2c30 *inst/doc/intro_to_pomp.pdf
6916fa33e317d9ef059dcf5a6efba274 *inst/doc/nlf-block-boot.rda
a3167370421d3418fe89d57dcf020047 *inst/doc/nlf-boot.rda
2b0db998e4e7c37d224bc94bce0f4144 *inst/doc/nlf-fit-from-truth.rda
e01d68d3b77968776ab61a33f8a95bc0 *inst/doc/nlf-fits.rda
b06eefa11cb15709e64c4d0c8c374ceb *inst/doc/nlf-lag-tests.rda
4e29b95231ef8bfdf4f2ed323cb7bac6 *inst/doc/nlf-multi-short.rda
34dc95fb715d85fa425638830119faf5 *inst/doc/pomp.bib
0417937d76eed314cd37e46c7dade868 *inst/doc/ricker-mif.rda
f5820d921d7d315895de393632225a9b *inst/doc/ricker-probe-match.rda
c92659aa01074bc416e5c6c0c63f433a *inst/examples/gompertz.c
2b32586f71b1692c7a15e696014919bf *inst/examples/ou2.c
fb2e6efc0ee146155176f46f7162bd1e *inst/examples/sir.c
1de91e16a6adb0010fdb408144c2fd71 *inst/include/pomp.h
47657972b53d9002af71ad7778dfcc32 *man/LondonYorke.Rd
c4df728c46442b7ca7cd9a6a1f726aa2 *man/basic-probes.Rd
0ac01a4c88a4befa749d9f7b2143d7c3 *man/blowflies.Rd
e4323807e6750a7880873c85ab4cd0fd *man/bsmc.Rd
ce0541c2add59559bb19f3b2ad78622e *man/bsplines.Rd
30d2d9840654f5dd97be8617a6a0b1db *man/dacca.Rd
6bc92e825445e45e68491484cec99b1b *man/dmeasure-pomp.Rd
f3c03a19d4308bc691c4b4d11f9c81c9 *man/dprocess-pomp.Rd
17672157f88b3e25c3fe58bbb4dd9ab8 *man/eulermultinom.Rd
c8d83cca78cc9ae47d4da2eb607eca6f *man/gompertz.Rd
bdccf13a1a2753e44528cc0d6b19a1b0 *man/init.state-pomp.Rd
225d90ab2d054e9ba3b63e0a7be693f8 *man/mif-class.Rd
b3e4e67e87cf4b71607fbb40cd0a6d3f *man/mif-methods.Rd
c96c42f6f91f55437b3ef3b1090a1361 *man/mif.Rd
ecbe88e0e29e351d00bcf97dbd1f611b *man/nlf.Rd
fd1481272448fea2e18db2efea285f98 *man/ou2.Rd
fdc8dc01d552a6bf7a15d9d34358b898 *man/parmat.Rd
6ca74fd6c08d567ed7496cfb3f812608 *man/particles-mif.Rd
e37c29ddbafa22908ade1fc9acc10f4c *man/pfilter-methods.Rd
02b4ad6cc98acefb3e603862dcdb49a8 *man/pfilter.Rd
320911f4b12e02f81809fc3a1c963ede *man/plugins.Rd
503ef97458fd3ec0f2ee897d4e88ab3c *man/pmcmc-methods.Rd
56195a5bc67d0c7c551d5b1816956127 *man/pmcmc.Rd
1720e2a6df321cd2f6a4751f43d09b35 *man/pomp-class.Rd
a7671a478931d38433f5f491f2ce4f6c *man/pomp-fun.Rd
2487411e79d5efe9a2ff54271ec17b8a *man/pomp-methods.Rd
2d7e6d9a9cbbce64e9c28b4f25c5adfa *man/pomp-package.Rd
bdc1fbd94eb1f843debcafa7ae0225bc *man/pomp.Rd
e65bacf6a9d42461dda5293cb745065f *man/probe.Rd
3548850e45707fc2bd06c0f8d2578956 *man/probed-pomp-methods.Rd
c8cead48a2d32d32dd509b639307bb27 *man/profile-design.Rd
00284a281ecbcbd9da779249f51b329d *man/ricker.Rd
ec90ed9e912d2e74eecca7221f6013f9 *man/rmeasure-pomp.Rd
5076820a428487319e3c07cd7466c4b4 *man/rprocess-pomp.Rd
a622775bf50e4acfa26eddbbaf7f6489 *man/rw2.Rd
2a0845688690e9e4e630213e83014e15 *man/sannbox.Rd
f229d3943469b6135c3ab69e3248a098 *man/simulate-pomp.Rd
13b7409e31e955de8d929e0b13a536b1 *man/sir.Rd
63b6399361a5768bfe283acf1f9aa100 *man/skeleton-pomp.Rd
8d777f29a60a2644728b45ba66e6d721 *man/slice-design.Rd
987795ea117a3699cba1f022f416fa14 *man/sobol.Rd
e23132cdb1bd4c1bd44549548bfa8ec2 *man/spect.Rd
fd54e1f2cc88dc5504961a9f4d51554e *man/traj-match.Rd
5c06d643218a86332d40290cd71a6cf3 *man/trajectory-pomp.Rd
bd7cab33f0bae03fc1251b7b5df95d97 *man/verhulst.Rd
44374e12ccddbc8b95f5e20202a0687d *src/Makevars
eb6ec7176cea6424cc3c97b07a0e2479 *src/R_init_pomp.c
dc1d0f02259d01fa2df7f4d242942aca *src/SSA.f
0c95957601b470695290ab2a2639b829 *src/SSA_wrapper.c
41387cedde7a64259060c3595ecba6e4 *src/blowfly.c
dd78124ad960a695ba72220eb49315ca *src/bspline.c
0b10bb0e1be9bc49bda89652dceef7f9 *src/cholmodel.c
83d74dc85834574325043088c8cae8df *src/dmeasure.c
bb1545b5d03397be3d5263456ccb1dfa *src/dprocess.c
bd100683f5548149fac0a2245cc5ff00 *src/dsobol.c
489fd1ece297bbd7ebeb49442ccc943e *src/euler.c
cceb7ad3fbd4ace8228a915207c3d795 *src/eulermultinom.c
75d4e5b83bc144f1709a207d12dac482 *src/gompertz.c
06ae7719bc29a67312a7cc4fa4fb489c *src/initstate.c
c6d9d044ef9423b911950b839c6d2486 *src/lookup_table.c
a3c54841dfb20ff0c27e6297a6dd9353 *src/lpa.c
2d1118d10ed9f67e5c6c137b0180fa7b *src/ou2.c
79748a6901d69681362be37d799eee8f *src/partrans.c
8a86c0071e98b20c736424e1b574e6c3 *src/pfilter.c
1de91e16a6adb0010fdb408144c2fd71 *src/pomp.h
c2abfe187fb557ac7824a45c96e60df1 *src/pomp_fun.c
d6d2e18efd106386a5b20435aa2c942a *src/pomp_internal.h
5e2210aa36334af59cfa73662f0123cc *src/pomp_mat.h
29dfb8eac6ababa718ed6d3ff1448a1b *src/probe.c
94787afa9f03c321d2b4d6de57d23f65 *src/probe_acf.c
712280f08d74144816b3b120d8eeb5cb *src/probe_marginal.c
2f3fa99c841f11417e87dbf1e7ba223f *src/probe_nlar.c
e6336dc8a11e232cb2fae6de0c4bc7ac *src/ricker.c
80fc3d6a8a6bf5a1932f33ec3bc3fb42 *src/rmeasure.c
10a576990f35bed781837a11f5bde792 *src/rprocess.c
742e7cc3594fc42f898f956f1c2fce1f *src/simulate.c
066b970223f1d002c562211fdb56a720 *src/sir.c
df3f5a38d4e589d0d52d07795032a26a *src/skeleton.c
557ce952eed189a3610f2bb746b08a45 *src/sobol.f
64d6159c656724f3657e556d828e74e3 *src/synth_lik.c
0397a47dc81478a66003ed12df4044b8 *src/trajectory.c
13f807fe6273d10b151e462470268a3c *src/tsir.c
6464ba013708f3e01089fd3009ca2b24 *tests/bbs.R
9c14c08cfeba0277e422674f81a7a6cd *tests/bbs.Rout.save
08452208cb62f55592392e5c649ab1b5 *tests/dacca.R
0aa0fc866aad95abe4be1e33b8dac50d *tests/dacca.Rout.save
5f3cbc1544f7c956aadce2db322c025c *tests/dimchecks.R
6dc4cc2e359deddb47542e90668e2cff *tests/dimchecks.Rout.save
e062943c6d20a5eff6bcb6ca9e4e4367 *tests/examples.R
35558642d305fe1e25949000c467c3e1 *tests/fhn.R
1d25a620d20ca90591be66525331be0b *tests/fhn.Rout.save
c4fe2c02835d555258a1ad84eeaa9c66 *tests/filtfail.R
713d35c3783e18995f3c02023a9765f9 *tests/filtfail.Rout.save
5cb2e1a4eadb33c7ce6db10ab8bcf95b *tests/gillespie.R
40132addc8a4851fc0e498d5e9cbd173 *tests/gillespie.Rout.save
207602f0d4eef0dc7364dd37e3a498df *tests/gompertz.R
34e02ad0392fcbf2a967c192dcc7b849 *tests/gompertz.Rout.save
09bc6670ff0dc6e0149ee19496b74d79 *tests/logistic.R
4d5201a99cf1aab0a7ee25c23d44a38e *tests/logistic.Rout.save
3c0928a530c0c88eef6cb87211b64b14 *tests/ou2-bsmc.R
fa1d10df71fb0f4b331f12b65ac0bc82 *tests/ou2-bsmc.Rout.save
ff208892e4f4f19266d5241af4aff0c0 *tests/ou2-forecast.R
957affe16a2af190c510c65ffce299c1 *tests/ou2-forecast.Rout.save
4029c5ef8501170c0e4fa556af6a5811 *tests/ou2-icfit.R
a2bb460591500889c3aeba08d1035c80 *tests/ou2-icfit.Rout.save
d6aba4e85a41e57100a10e257a5fb26e *tests/ou2-kalman.R
29edfc5af75d051b94f1a7c6c3483b54 *tests/ou2-kalman.Rout.save
2b87c75403fe85e464096964461a23c5 *tests/ou2-mif-fp.R
b2fe7a5b693b5d350050b0ace446a852 *tests/ou2-mif-fp.Rout.save
4507bff64b88dbc4347c9a4d17e9540b *tests/ou2-mif.R
904517a8818961c8b152fef29ddfc86f *tests/ou2-mif.Rout.save
cf0619a6ea99da9136612a444366f1cf *tests/ou2-nlf.R
d2190f9cd1932d108d9500810d014a0c *tests/ou2-nlf.Rout.save
33c251506d160d0ffb3e66235d83cdfb *tests/ou2-pmcmc.R
d9a6663dbd6d593e719bc9cf42e2f46e *tests/ou2-pmcmc.Rout.save
1ff0e2f7498b35a7ff0f9b6e530f4563 *tests/ou2-probe.R
1819096131399c3034469ddf4c6dcd01 *tests/ou2-probe.Rout.save
e8ca269f465b26bee2e7692f303c6805 *tests/ou2-procmeas.R
3df92d0e3db91de9f66c859ae3181038 *tests/ou2-procmeas.Rout.save
1fbb6613fad4dbf4193647d3c5e3c394 *tests/ou2-simulate.R
6b3dedc9fa6725dba979a058a0705ed8 *tests/ou2-simulate.Rout.save
5c2f11b64d248535e96e522dff5e0cfb *tests/ou2-trajmatch.R
41fd0e76699672367291cb2ba143343f *tests/ou2-trajmatch.Rout.save
fcd13c34f51e39e4ca9c7138c0ff1c26 *tests/partrans.R
042724af2346d3ebe5d3b0a6f600e316 *tests/partrans.Rout.save
d6ccd36da8ed04b031d2b544980e5026 *tests/pfilter.R
d873dd4a6cb673ed37deb487557b6606 *tests/pfilter.Rout.save
53f62a779e4c57c1fb251c988a013729 *tests/pomppomp.R
56f7b016ae7c935f5f77e4ffbc5ce738 *tests/pomppomp.Rout.save
2223202bfdf2466277231ba2acb72290 *tests/ricker-bsmc.R
7197eef15245d5202559700a7fe02964 *tests/ricker-bsmc.Rout.save
4c7fb4bef8810eb960c2f5b33974edad *tests/ricker-probe.R
a066967e5876872b29e91a7404aedff0 *tests/ricker-probe.Rout.save
f09f165080ff4419cebec1c2c432c203 *tests/ricker-spect.R
9682f545b292f42ff8b51f94a164c115 *tests/ricker-spect.Rout.save
add69f1db72fccf925f8ff2758370fe2 *tests/ricker.R
2a555fc0ffd76b216024e17346935e6e *tests/ricker.Rout.save
46124632e42d985ce297972702677855 *tests/rw2.R
e4a5e607d24c98258d230197847468a2 *tests/rw2.Rout.save
ca36c345192b306d2c1c644fe9946092 *tests/sir.R
aa35cf883112f042ae64ac1ee1cffef4 *tests/sir.Rout.save
99dbe9931bf84f0726b61bdceff21722 *tests/skeleton.R
e5750dbc9d0317e7b32003d7428cfbcb *tests/skeleton.Rout.save
5eac991cbdc0178f430d6369e6139be6 *tests/steps.R
a6567932dae2fd6a94252930c4559221 *tests/steps.Rout.save
abebe4825f6b5a405750e7fc85e7aa75 *tests/synlik.R
c4c074a3c4df7b7196d25e50d3ec683b *tests/synlik.Rout.save
f072ef2f7940aba7f03d41c6e8a2f635 *tests/verhulst.R
c889612d78c941504ecea51787ee31dc *tests/verhulst.Rout.save
