Package: polysat
Version: 0.1
Date: 2010-06-01
Title: Tools for Polyploid Microsatellite Analysis
Author: Lindsay V. Clark <lvclark@ucdavis.edu>
Maintainer: Lindsay V. Clark <lvclark@ucdavis.edu>
Depends: combinat
Suggests: ade4, adegenet
Description: polysat is a collection of tools to handle microsatellite
        data of any ploidy (and samples of mixed ploidy) where allele
        copy number is not known in partially heterozygous genotypes.
        It can import and export data in ABI GeneMapper, Structure,
        ATetra, Tetrasat/Tetra, GenoDive, SPAGeDi, and binary
        presence/absence formats.  It can calculate pairwise
        differences between individuals using a stepwise mutation model
        or infinite alleles model. It can assist the user in estimating
        the ploidy of samples, and lastly it can estimate allele
        frequencies in populations and calculate pairwise Fst values
        based on those frequencies.
License: GPL (>= 2)
URL: http://openwetware.org/wiki/Polysat
Packaged: 2010-06-24 05:52:58 UTC; lvclark
Repository: CRAN
Date/Publication: 2010-06-24 07:50:13
