72c400a1366420bf93c4f196a838c7f6 *DESCRIPTION
cf3dc8c7845dc30eaa4ead7682ff416a *NAMESPACE
aa41632024862b093ecb9b80027a139f *NEWS
3613c7e4d88b663c80e8599eb0c0f8a9 *R/RcppExports.R
bd095cf38405a861f2f82f3f6cac1c05 *R/calculations.R
75ab53615848a60b62469267a8f922e1 *R/classes_methods.R
7ab374a472f85c60e36efbde9334478f *R/data_export.R
e7d6fae21792c085b25de96a5c6e8ee2 *R/data_import.R
63739c9b04a2d3ea02646e5bf86fbbd8 *R/overdispersion.R
b2e60a0b1e8eb25f9acc08ea55201fac *R/pipelines.R
460a8d863aeb4834c1b01c0ddc8c577f *R/sort_isoloci.R
53dc956ad94d2502a1e2e1279aebb366 *build/vignette.rds
6c98bfc9c96ec05f1a4a9ae6ae9530c9 *data/Msi01genes.RData
a1e9b10b89d7f060874f93d35afbc9f0 *data/exampleRAD.RData
af782ad642be58014e4efd2d1e9f3320 *data/exampleRAD_mapping.RData
b145ac0b6e7a447d582fbbdcad7a67ec *inst/CITATION
7b5b4f818cffd8295822694b18bf559b *inst/doc/polyRADtutorial.R
8dc9fc6e1416933583f59780fa417664 *inst/doc/polyRADtutorial.Rmd
d2cda96078a2cb4428f5bcf524fc45cf *inst/doc/polyRADtutorial.html
90a7f3749e5a4b70066c3a481355cd33 *inst/extdata/ClareMap_HapMap.fas.txt
d06b0b7eb91371ed245c7c4810e26770 *inst/extdata/ClareMap_HapMap.hmc.txt
d1b7f7491d5395b04fe23023aa79e769 *inst/extdata/ClareMap_alignments.csv
a657e0dcafda950e449d6e51fa7b0356 *inst/extdata/Msi01genes.vcf
f2a3b2a92c245fb1ccfaa1859c8256c2 *inst/extdata/Msi01genes.vcf.bgz
647541d81fd0410db9830ae2927b5de8 *inst/extdata/Msi01genes.vcf.bgz.tbi
a3132af9e1d17abb2b11229e70de62bb *inst/extdata/examplePCA.RData
a78a3ce434a1bec44e264d0a75c0ee1a *inst/extdata/exampleTASSEL_SAM.txt
46df2e9b60a7c4043f49b1ab00ceeb94 *inst/extdata/example_TagTaxaDist.txt
b4b8fbdd2a8576d6cdf097580ba69f53 *inst/extdata/simulate_rad_data.R
08159e63fdb73a0d66068109a42257f6 *man/AddAlleleFreqByTaxa.Rd
e89614d835ed5006f5c28bb927f52efd *man/AddAlleleFreqHWE.Rd
1d42c393baa73570046dc7c90386917b *man/AddAlleleFreqMapping.Rd
e603e5664bed62da0aa681b048797b66 *man/AddAlleleLinkages.Rd
915185d66bc79b08579da716c3192cf0 *man/AddGenotypeLikelihood.Rd
aa4160f278dd9bef01ffa54c85a4220a *man/AddGenotypePosteriorProb.Rd
f730f5a25daed70fae1818e52f624d39 *man/AddGenotypePriorProb_ByTaxa.Rd
98cc4a2225715c8c400c00c6c7996165 *man/AddGenotypePriorProb_Even.Rd
b4cd46cb4f96da9b93489ea1457e78ff *man/AddGenotypePriorProb_HWE.Rd
e1b6014b351af4043b5b467e4a3865fc *man/AddGenotypePriorProb_Mapping2Parents.Rd
a403c888b1076b229df2085c7538f7f4 *man/AddPCA.Rd
c9188c7459c006d764d34f908745a069 *man/AddPloidyChiSq.Rd
559c095869c21d8d543c584396d31b37 *man/AddPloidyLikelihood.Rd
49a38b514b53975ee0cf5a5465bb71de *man/AddPriorTimesLikelihood.Rd
e31aaffb23304ce684d1723ebf4629eb *man/CanDoGetWeightedMeanGeno.Rd
a5cea907d699c4bf254438d04c019b5a *man/EstimateContaminationRate.Rd
2b783b9cdb21eeeadcf8fa620789c6c6 *man/ExportGAPIT.Rd
fcda3b3ef2ba7dd85366ef6ccb965f05 *man/GetLikelyGen.Rd
01f00ca76c35bad53e15605ef5d84032 *man/GetTaxa.Rd
6ad695c85776800c6c6d0f745b4a5048 *man/GetWeightedMeanGenotypes.Rd
d52ca5fad1e3b404d17c668af8a59b65 *man/IterateHWE.Rd
92756fed7c0d9fba42d4e2f4f9600122 *man/LocusInfo.Rd
e88b22eff85afeaca8d83b5053ecfee8 *man/MakeTasselVcfFilter.Rd
1da0300fa0c4fc661cf59f1ea7743212 *man/MergeRareHaplotypes.Rd
eceeb1e0ffa701cd1b47c66862e6bd81 *man/MergeTaxaDepth.Rd
c92ef5c59322e75923fa857b038f508c *man/OneAllelePerMarker.Rd
279adc251036f979847cbd17162af3c2 *man/PipelineMapping2Parents.Rd
efa133fcae75b8f10781a59ca08b1574 *man/RADdata.Rd
76ab2cc0ebc6ca6c983cfba32deb5359 *man/SetBlankTaxa.Rd
628b676668d278301f1247299dd9103a *man/StripDown.Rd
88eea21a90ab329341154554bfba9003 *man/SubsetByLocus.Rd
b536743c5f9693d75652f6c34a3368fe *man/SubsetByPloidy.Rd
d8c6c032affb1938d06c1b9ee6e8f5de *man/SubsetByTaxon.Rd
faf5823d7562c815367f1f7d1fbbe439 *man/TestOverdispersion.Rd
9ca3d6a68ef302e968f355b1cd0b82a2 *man/VCF2RADdata.Rd
636cec568cace4cf8cc89c083e012d91 *man/exampleRAD.Rd
b11683de2fbd560def3b0fd5b754c8fc *man/readHMC.Rd
2896d0af9201e78d30e5622f23a34d34 *man/readStacks.Rd
ecc55acc94154b1a08db8d026daed170 *man/readTASSELGBSv2.Rd
efded63c023f5f96e23b224f268a9942 *man/readTagDigger.Rd
eb4e7210b82cb185e0f95d54d842c4c2 *src/AdjustAlleleFreq.cpp
d60c9167604dbff4fb82ce761f07f3b3 *src/BestGenos.cpp
239f858681e84a68ae2caad2c9be8e0b *src/RcppExports.cpp
0b8c3cac4c181b52ffded1ab19a962b1 *src/ThirdDimProd.cpp
8dc9fc6e1416933583f59780fa417664 *vignettes/polyRADtutorial.Rmd
a413b5b6e0270008a2e7791a91268559 *vignettes/subsetdata.py
