1b4abc54904d232e262eec83e35d2b0a *DESCRIPTION
f48b7f648621f102518506f57a90f99a *NAMESPACE
95cd1a699fd44787ebdc1f0bed22e8c2 *R/RcppExports.R
0c8edd8ea333d4e1184d0f3fd460d62d *R/calculations.R
827c12090599a4f3d1609f80b7b658a9 *R/classes_methods.R
e7622a76c4fc66a891a5de4b15e59219 *R/data_export.R
09c4c8103fc388eb1a913853d1a9d62b *R/data_import.R
b3a073d2b60eab378d3ff46d0d002ddb *R/pipelines.R
460a8d863aeb4834c1b01c0ddc8c577f *R/sort_isoloci.R
7979c71c6ab41157e456eb926d940a1d *build/vignette.rds
d577ef27bdb7b6dffc85d032f351fccd *data/Msi01genes.RData
cc0f6b646000d9c7426118cc81597a41 *data/exampleRAD.RData
571ebf2fb55939b16f67986033c9c07e *data/exampleRAD_mapping.RData
97cb4463861c9e25d37fcaec703b45f1 *inst/CITATION
d580fc93c2959b04c1a27c6991c10b21 *inst/doc/polyRADtutorial.R
805325c4782b981ac621582b86e5e365 *inst/doc/polyRADtutorial.Rmd
ac078d60ea80594b4c971b514cf83f84 *inst/doc/polyRADtutorial.html
90a7f3749e5a4b70066c3a481355cd33 *inst/extdata/ClareMap_HapMap.fas.txt
d06b0b7eb91371ed245c7c4810e26770 *inst/extdata/ClareMap_HapMap.hmc.txt
d1b7f7491d5395b04fe23023aa79e769 *inst/extdata/ClareMap_alignments.csv
73b36228b4ce8e6a1b423ab5700cbc62 *inst/extdata/Msi01genes.vcf
e49f11d69dc64ea8a65caa7cee9688a0 *inst/extdata/Msi01genes.vcf.bgz
39c7a280cb4ab16fa911575017387a8d *inst/extdata/Msi01genes.vcf.bgz.tbi
b4b8fbdd2a8576d6cdf097580ba69f53 *inst/extdata/simulate_rad_data.R
08159e63fdb73a0d66068109a42257f6 *man/AddAlleleFreqByTaxa.Rd
e89614d835ed5006f5c28bb927f52efd *man/AddAlleleFreqHWE.Rd
1d42c393baa73570046dc7c90386917b *man/AddAlleleFreqMapping.Rd
e603e5664bed62da0aa681b048797b66 *man/AddAlleleLinkages.Rd
ca1e86b87533742c5ffae86f5f17f43e *man/AddGenotypeLikelihood.Rd
aa4160f278dd9bef01ffa54c85a4220a *man/AddGenotypePosteriorProb.Rd
f730f5a25daed70fae1818e52f624d39 *man/AddGenotypePriorProb_ByTaxa.Rd
b4cd46cb4f96da9b93489ea1457e78ff *man/AddGenotypePriorProb_HWE.Rd
e1b6014b351af4043b5b467e4a3865fc *man/AddGenotypePriorProb_Mapping2Parents.Rd
a403c888b1076b229df2085c7538f7f4 *man/AddPCA.Rd
c9188c7459c006d764d34f908745a069 *man/AddPloidyChiSq.Rd
559c095869c21d8d543c584396d31b37 *man/AddPloidyLikelihood.Rd
49a38b514b53975ee0cf5a5465bb71de *man/AddPriorTimesLikelihood.Rd
e31aaffb23304ce684d1723ebf4629eb *man/CanDoGetWeightedMeanGeno.Rd
a5cea907d699c4bf254438d04c019b5a *man/EstimateContaminationRate.Rd
2a2c7079258462498f0e0b4b8e432fbc *man/ExportGAPIT.Rd
fcda3b3ef2ba7dd85366ef6ccb965f05 *man/GetLikelyGen.Rd
01f00ca76c35bad53e15605ef5d84032 *man/GetTaxa.Rd
e4c38e22833eeab662cdb27a934c88ae *man/GetWeightedMeanGenotypes.Rd
ecbacf42726ac7fbbccbf1b12546cc86 *man/IterateHWE.Rd
6484d3bde400ccf4a385660123c584b5 *man/LocusInfo.Rd
e88b22eff85afeaca8d83b5053ecfee8 *man/MakeTasselVcfFilter.Rd
1da0300fa0c4fc661cf59f1ea7743212 *man/MergeRareHaplotypes.Rd
c92ef5c59322e75923fa857b038f508c *man/OneAllelePerMarker.Rd
c87347f3fe53ba2122f874bcacddff8c *man/PipelineMapping2Parents.Rd
aa8f801c0aecc9228755d421cd3bdefc *man/RADdata.Rd
76ab2cc0ebc6ca6c983cfba32deb5359 *man/SetBlankTaxa.Rd
628b676668d278301f1247299dd9103a *man/StripDown.Rd
b46a4b49e33994f0131c86c28b7ee4da *man/SubsetByLocus.Rd
d8c6c032affb1938d06c1b9ee6e8f5de *man/SubsetByTaxon.Rd
4ec6126e3e0a60591bd8c651ef39c349 *man/VCF2RADdata.Rd
636cec568cace4cf8cc89c083e012d91 *man/exampleRAD.Rd
2ab1b534b62ce46fbe23b7ca50d7df95 *man/readHMC.Rd
06b34983ab6ab67f638d13d0f085ea02 *man/readStacks.Rd
ce19313451828aaffa72e9b968273e45 *man/readTagDigger.Rd
3b49262add8f2ae964b6c7018f84fdd1 *src/AlleleProbExp.cpp
d60c9167604dbff4fb82ce761f07f3b3 *src/BestGenos.cpp
fe7439107873eaf50b801d73663f0308 *src/RcppExports.cpp
0b8c3cac4c181b52ffded1ab19a962b1 *src/ThirdDimProd.cpp
805325c4782b981ac621582b86e5e365 *vignettes/polyRADtutorial.Rmd
a413b5b6e0270008a2e7791a91268559 *vignettes/subsetdata.py
