14c66c55f576017b901456c2be64f52d *DESCRIPTION
d116de6f3ea180c07b88de9dc73fb917 *NAMESPACE
5191776dbbe14a93a1ecc7606938adb6 *NEWS.md
d92759e35142a40605fc358e193c35f5 *R/add_predictors.R
65d8622c3b73511656ea4b3b07707ed7 *R/align_ids.R
41708e927be0535817ef19d38b5c70e9 *R/big_cbind.R
6c9a33881c6a3de5c4c450705a84379b *R/check_for_file_extension.R
7bf0c6df9b02af8ee6fc8ccbf7eca939 *R/coef-cv-plmm.R
b3c95e9caf3d2acfc73e397a69ea87d8 *R/coef-plmm.R
cbb70f0255c94fce63a02f06554b3dff *R/construct_variance.R
04105229affda9b7d02cb35e46a20c7c *R/count_constant_features.R
5630be735cb85c946f44f87221010975 *R/count_cores.R
b4ce3a402f90e2d21739f8a6fb789066 *R/create_design.R
e0a17a16b99a568efa5ecf5c153a5b6d *R/create_design_filebacked.R
d57409f6931cf276db2a49c524a98a6e *R/create_design_in_memory.R
2a16494919eba4c69dd26a20bdbffdad *R/create_log.R
40a6953a7faf4afea7fcc2e6fd814043 *R/cv-plmm.R
a9e41e49ae65da7a1a867515fd6d8403 *R/cvf.R
9d5ca5344c49b98260358a241126ac0c *R/data.R
7f235d43196bedd476bf7409f0857558 *R/eigen_K.R
ba4dba83adba3e14e7710659701f2f9e *R/estimate_eta.R
ba84056b3d7d759e52ef0dba0384cdaa *R/fbm2bm.R
15c665f4bd96c0abcb33fee23edb74ff *R/find_example_data.R
521863a030d1d59c2bc4c23b096e09c6 *R/get_data.R
94d06f28b399982224ddf9ea2ff93df1 *R/get_hostname.R
53fb295cba72d74b706eb85f64e02e96 *R/impute_snp_data.R
5741838ca39fa2fd09d003c8ce2bd696 *R/index_samples.R
8de2cb6ec673b8ad55325b0dcc7cdebf *R/lam_names.R
689b314066a4939fd2154289e54d4971 *R/log_lik.R
87b47fff2094a38731fbdfbc00b1636a *R/loss-plmm.R
714d837f6c96c63d99bfaface999d279 *R/name_and_count_bigsnp.R
fe5fe1e84683b79d9e3a42bcd5b8479a *R/penalties.R
dba5c868b3a553beb9a22b4165748650 *R/plmm.R
a6ee1518eae3f92b217f0aea4e9cc0bd *R/plmm_checks.R
39fcb0d8f140971e5b7ad60bc5c5c296 *R/plmm_fit.R
50ce58c8fd9f950fbeef339ed28de065 *R/plmm_format.R
9857ad6fd7344b1ee656520a9c0ad4bb *R/plmm_prep.R
be1f166a3b0aee0f11124e684596e98c *R/plmmr-package.R
6eecf26f59e6d404e3050b217cb1c763 *R/plot-cv-plmm.R
08abcde14701beff11d4f77c41c9630e *R/plot-plmm.R
ca74e1ab3bd56adff8e13c200e223625 *R/predict-plmm.R
fc8cbbb9d1b4f620df93e0bf9b13c8a7 *R/predict_within_cv.R
93dcea24a880c6eff3917604e0707faa *R/pretty_time.R
79f410ac197b4dd717a01818bee143a9 *R/print-summary-cv-plmm.R
d86b6ff9cb0ee6d84bf16896d85883b4 *R/print-summary-plmm.R
538f36526ac39163380d81bb9e210a98 *R/process_delim.R
9ec8a4134e10a4fe2368ffcf1ec66011 *R/process_plink.R
926f9cbae12fc6a9d3e3726c74aa8c0c *R/read_data_files.R
f8e8d1f5b8a23105fadf06b1c74e76ef *R/read_plink_files.R
c2cde1129e047e7f979bbda874019cc0 *R/relatedness_mat.R
bfd262fdd59ee61bd5cf7f95a48e0543 *R/rotate_filebacked.R
44db413ccf526d643c1e378e9d86a4a8 *R/setup_lambda.R
5b20e5816c111dba09ab683967d4ef34 *R/standardize_filebacked.R
d3dffcc5423563a24beacf85f8648b66 *R/standardize_matrix.R
aacd5f0953718091d8de33e6aa371608 *R/subset_bigsnp.R
008f092b7c340a929890066d56ad4ee9 *R/summary-cv-plmm.R
4652c59fd52ea4b530a70c080bf610d2 *R/summary-plmm.R
651c8e6b88dac3fc25adf4894cae1b45 *R/untransform.R
dd80212ad1eae27ea46a9e96021eee29 *R/untransform_delim.R
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5515c0444f137322a7c0db273a020510 *R/zzz.R
e2ae05a3069971f969738298a21841f5 *README.md
4454e632feb75ce4f508807d50b3b12f *build/partial.rdb
8ff31169b51204c71611f0048b4d980e *build/vignette.rds
7121accff35c31ff88eee089bbfd72a7 *data/admix.rda
749a4b246f8352711b65c5e5e96ae544 *inst/CITATION
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3dbb7bbedbf278a3299a1b1cd0c13230 *man/MCP.Rd
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8049f66005ff698ebb55ce3f95213da8 *man/big_cbind.Rd
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2e0401782d8b1cea8c7ac5c5e061f2d1 *man/create_design.Rd
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93585990fe154dc9b2c62bd72c14eca4 *man/impute_snp_data.Rd
149c5e310345541cbb34a123df5d1d96 *man/index_samples.Rd
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5ecebca591af81f00935eaacdd2fbfa2 *man/lasso.Rd
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cb1db9eca37b9906c576fb2e00e623ec *man/plmm.Rd
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2888621528e2d04b34d18440277c38aa *man/plmmr-package.Rd
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4a4b014eee1438306d7ed7ba90f47af0 *man/print.summary.cv_plmm.Rd
98814146168ff2b70792f076e6afb201 *man/print.summary.plmm.Rd
8cc8983dab4c47535a2b68981876e16b *man/process_delim.Rd
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537779ee245daf0fbc6a377f706c2173 *man/read_plink_files.Rd
6d62d143ba662f5d491faecfa7b7e976 *man/relatedness_mat.Rd
3e1bff9656015f06997d3607ff1bb294 *man/rotate_filebacked.Rd
737e985cf4b5a7b8ecacce3558144f18 *man/setup_lambda.Rd
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83601686de9dd476ffafd60c4c18dafc *man/subset_filebacked.Rd
9597c8e2c68a016ad096d7d318a3ca02 *man/summary.cv_plmm.Rd
9002a03f7709ff5a23a14a6264efb3a4 *man/summary.plmm.Rd
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e36daf0e2bbc265932539e68a0221aca *src/Makevars
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6343d85cba11e26b0c756fe6eae12df8 *src/utilities.cpp
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e0e76ef36e5c58e44b726015641bd0ea *tests/test.R
7d29cd7068e35a337e64f1beabe324da *vignettes/getting-started.Rmd
