f7c696f543a9c98aebd6b8dec42d78f8 *DESCRIPTION
a6999d93618b7dfc98b9c0adf7323793 *NAMESPACE
bdb9b510e36f9ff4ee0f3f83b7ecb4fc *R/add.to.population.R
b8b2de9a9608dcc7cd8928fc783f6619 *R/assignLinkageGroups.R
418786a25e887907ff3cad95ac95e48e *R/checks.R
4b84425aaa61a0c6cfc04d8ef054847d *R/create.mixtures.R
ce8b37c26609f19d438f570b927bdf8f *R/create.population.r
328ba4fb5b252c1cf37a0a5bde57b457 *R/cross.denovo.R
71d01caac8817ebf500b4a4f324b6302 *R/cross.saturate.R
e7890384df355085babb75fb84aa43ff *R/fake.population.R
690d92e3ec1379a1e3a5ad442402e314 *R/find.mixups.R
617a53ad595103f9a838ba0f6993077f *R/findDiffExpressed.R
b884eb1fbe74b1807931aa1f94c7fe4a *R/generate.biomarkers.R
4b9b494c458d7c8d2f134ad2954ac39a *R/genotypesToCross.R
ce8c0de99a936054623be1cd2e60ea60 *R/map.functions.R
f613fdc7447d072698539fdca1421151 *R/markerPlacementPlot.R
79b2bc7f001392db83f1aa13ea5c3b92 *R/markersCorPlot.R
a25b825c5caa866cff0192f4c1c06599 *R/plotMapComparison.R
055978db254aef64a1c92996cdaf3574 *R/plotRoutines.R
d58c07be3af6900c8396ed318abe8f84 *R/postprocessing.R
5fcc7428830a5c3da0bd2a95a22c52bb *R/power.plot.R
10dbf5fc05ce87e3158cd62aa23d1508 *R/qtl.comparison.plot.R
0af90b22be1c3256a7796d7a8f3c2f41 *R/read.population.R
4c93fc386b741ef475a21cb24d4248d7 *R/save.gff.R
0dba037533bd51c79f4dc9aa1ae1fbb2 *R/scan.qtls.r
b21fe12347854175f8f3ecb26517c866 *R/transformations.R
3616ad346401dd8e1ee5de25e6f98650 *R/utilities.R
c6c524b18fc3ba43f24362a5a075ebf2 *R/write.population.R
9ed89231523aea4c7dbe6c1b6f337e1a *README.md
8a05a5031b4d8f45e137119c2aa59909 *data/datalist
94d948d67c0d648eff13c511e2425b29 *data/yeastCross.rda
d5e2f9e903a0b6162350f196a1b10b12 *data/yeastPopulation.rda
13cac3de174a3449230190f25932c177 *inst/BUGS.txt
a86ac4554a86d7dc86f4c4dba46b231e *inst/CITATION
4850a80ef658952849306ba82c066a20 *inst/TODO.txt
15e1e51045f7d3bd3ef946599b3c265a *man/RPpval.rd
57a3baf838aca3f7887ba4a275ab14bb *man/add.to.population.rd
236208091467391f5cb3a95a19ad9d24 *man/assignedChrToMarkers.rd
a19b6b67b2cb89e105303c2faa9a1c58 *man/changeChromNumber.rd
72aeca1f614deef24d9ac3f5d8f2fb5d *man/create.population.rd
e4650997201f2bba4df5a2805ee4c9b9 *man/cross.denovo.rd
27a353aaa09ee41f7e4705d62c726657 *man/cross.saturate.rd
b90fd31b2fbfdd7dfba8e99777352dd3 *man/fake.population.rd
7c42fc2e71dd45eb5bdd01b213e377f7 *man/find.mixups.rd
4bd685fee8c5c53c9bf4a0cb64846d83 *man/findDiffExpressed.rd
5bdd2d3997340fb1ec22d10d28cfe94a *man/generate.biomarkers.rd
5a825d57e169b5727ae17806bcdba683 *man/map.functions.rd
e7c756637cfab2d971b2288ce7d8f144 *man/markerPlacementPlot.rd
ec411c48ca955c4a8a5d2743e06c5099 *man/markersCorPlot.rd
23f588ecc032d90273872b8a6a234899 *man/phenotypes2genotypes-internal.rd
c28138105fc57f52bd2e27fc76431e77 *man/phenotypes2genotypes-package.rd
9f626369fad78258238b8fe14cadd32d *man/plotChildrenExpression.rd
8b1c03bb7453853d4b817b43238c2cac *man/plotMapComparison.rd
2018af05c706eeddd8b344fc8e8db935 *man/plotMarkerDistribution.rd
69d4b6b6bdaec87ff2e61ba979e92153 *man/plotParentalExpression.rd
1ca1a05ab2e6d73eaf40ba80cfb61cd0 *man/power.plot.rd
9ad26e012002105ad15e2f67ff30c5d8 *man/projectOldMarkers.rd
b7abcfb2f87c40b0ce30dbcfa40d2540 *man/pull.biomarkers.rd
8d4723d388791c9e67ec75dab52a7a05 *man/qtl.comparison.plot.rd
735d8c7cdf78096592c2849d0c8476e7 *man/read.population.rd
f81678e82d74ae2c47a085e68a6b2db7 *man/reorganizeMarkersWithin.rd
ad468bd4df6f01c42664e5018e81bbe4 *man/save.gff.rd
a9e445bf50ea445a3e21d6ccf0a4d8ac *man/scan.qtls.rd
9531f56ec8e7ce8cd87b7bf73ea5f61c *man/set.geno.from.cross.rd
cdbdbabcb8b7cf24df3f9a2049cd04ff *man/transformations.rd
4f3fadbdaa98ce0041af1d650967206f *man/write.population.rd
9a0f1d4eefbfff6f88a5f791e080c6a9 *man/yeastCross.rd
8d5891a065ca2b510aea529363767054 *man/yeastPopulation.rd
c614670300ffe2199f2667170e8930ab *tests/1k/maps_genetic.txt
edba9f746412f41c8f84f4661d30c1ae *tests/1k/offspring_annotations.txt
f18b60c259244030892484067cb384fe *tests/1k/offspring_genotypes.txt
e1ac5ca3a2ac725ea629372cb3168555 *tests/1k/offspring_phenotypes.txt
2beb99dc6038b0f675a5901ef801e155 *tests/1k/test.r
d3e87f4702a52f51d400e07d223802b8 *tests/genotypes.csv
7f2eaa77e8dbe35f5aebcd4303bdc14d *tests/map.csv
fcfbca680a25807afd912015209fc76e *tests/mycross.csv
2cf0f1c9fa7da928173cc3f725b6d132 *tests/offspring_phenotypes.csv
6e4101faf879fb66d32a48a2c33ee982 *tests/parental_phenotypes.csv
e086aecc906dda5b6f4696a89b7ff796 *tests/test_analysis.R
